New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? NC_013198 = 1539601546 (0.969)32 (0.057) 13/180 11.1 coding (3358/4167 nt) LGG_01525 phage‑related minor tail protein
?NC_013198 1539722 = 486 (0.777)coding (3237/4167 nt) LGG_01525 phage‑related minor tail protein
Continuation Left: 0  Continuation Right: 0
Rejected: Position hash score below cutoff.

CCTAGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC....................................................................................................  >  NC_013198/1539492‑1539601
....................................................................................................CAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCCT  >  NC_013198/1539722‑1539821
                                                                                                                                                                                                                  
CCTAGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTC                                                                                                               <  20:362684/101‑1
CCTAGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTC                                                                                                               >  20:287901/1‑101
CCTAGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTC                                                                                                               >  5:287901/1‑101
CCTAGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTC                                                                                                               <  5:362684/101‑1
   AGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAC                                                                                                            >  16:329210/1‑101
   AGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAC                                                                                                            <  21:1095634/101‑1
   AGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAC                                                                                                            >  1:329210/1‑101
   AGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAC                                                                                                            <  6:1095634/101‑1
   AGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAC                                                                                                            >  19:1242200/1‑101
   AGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAC                                                                                                            >  4:1242200/1‑101
     TGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACAC                                                                                                          >  14:300686/1‑101
     TGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACAC                                                                                                          >  29:300686/1‑101
      tTGTCTTGTAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         >  26:132787/2‑101
      tTGTCTTGTAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         >  11:132787/2‑101
      GTGTCTTGCAGCTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         <  12:325528/101‑1
      GTGTCTTGCAGCTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         <  27:325528/101‑1
      GTGTCTTGCAACTTTGCCAGTTCTTTTTTAACCCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         <  6:871477/101‑1
      GTGTCTTGCAACTTTGCCAGTTCTTTTTTAACCCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         <  21:871477/101‑1
      GTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         <  14:1219457/101‑1
      GTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         >  4:716881/1‑101
      GTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         >  19:716881/1‑101
      GTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACC                                                                                                         <  29:1219457/101‑1
       TGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCG                                                                                                        >  14:812703/1‑101
       TGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCG                                                                                                        >  29:812703/1‑101
        GTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGC                                                                                                       >  16:994670/1‑101
        GTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGC                                                                                                       >  1:994670/1‑101
         TCTTGCAACTTTTGCAGTTCTTTTTTAAACCAATTAACCAACCCGGCTGGTAAATTGGTAATTACCCCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      <  4:1203200/101‑1
         TCTTGCAACTTTTGCAGTTCTTTTTTAAACCAATTAACCAACCCGGCTGGTAAATTGGTAATTACCCCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      <  19:1203200/101‑1
         TCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      >  28:268575/1‑101
         TCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      <  22:1128381/101‑1
         TCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      <  20:1070456/101‑1
         TCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      <  5:1070456/101‑1
         TCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      <  7:1128381/101‑1
         TCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC                                                                                                      >  13:268575/1‑101
           TTGCAACTTTGCAAGTTCTTTTTTAAAGCAAAAAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAg                                                                                                    >  13:199834/1‑100
           TTGCAACTTTGCAAGTTCTTTTTTAAAGCAAAAAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAg                                                                                                    >  28:199834/1‑100
                                               AACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAGACATTTCAACACCGCCAATGACACCACCTAAATCATAGTGTTCAACGCCAGCCA                                                                >  29:399695/1‑101
                                               AACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAGACATTTCAACACCGCCAATGACACCACCTAAATCATAGTGTTCAACGCCAGCCA                                                                >  14:399695/1‑101
                                                  ACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAAACCGCCAATTACACCACCTAAGTCATAGTGGTCAACGCCAGCCATAT                                                             >  18:1195750/1‑101
                                                  ACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAAAACCGCCAATTACACCACCTAAGTCATAGTGGTCAACGCCAGCCATAT                                                             >  3:1195750/1‑101
                                                             ATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCCAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCT                                                  >  12:382865/1‑101
                                                             ATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCCAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCT                                                  >  27:382865/1‑101
                                                                 GTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGG                                              >  10:684392/1‑101
                                                                 GTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGG                                              >  25:684392/1‑101
                                                                 GTTAATAACACCACGGGCTAAGTTGGTAAACATTTCAAAACCGCCAGTGACCACACCTAAAGCATACGGGGTGACAACAGCCATATTCATGATGACATTGG                                              >  2:554316/1‑101
                                                                 GTTAATAACACCACGGGCTAAGTTGGTAAACATTTCAAAACCGCCAGTGACCACACCTAAAGCATACGGGGTGACAACAGCCATATTCATGATGACATTGG                                              >  17:554316/1‑101
                                                                    AATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATCTTCATGATGGCTTTGGTTT                                           >  10:943328/1‑101
                                                                    AATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATCTTCATGATGGCTTTGGTTT                                           >  25:943328/1‑101
                                                                     ATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTAATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTC                                          >  2:34776/1‑101
                                                                     ATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTAATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTC                                          >  17:34776/1‑101
                                                                             ACTGGCTAAGTTGCTAAACATTCCAACAACGCGAATGAAACCCCCAAACGCATAGCGACTCATGCAAACAATAGTAATGATGGCTTTGGTTTATTTACCAT                                  >  2:442600/1‑101
                                                                             ACTGGCTAAGTTGCTAAACATTCCAACAACGCGAATGAAACCCCCAAACGCATAGCGACTCATGCAAACAATAGTAATGATGGCTTTGGTTTATTTACCAT                                  >  17:442600/1‑101
                                                                             ACTGGCTAAGGTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGAACTATTCAGCATGGCTTTGGTTTCTTTTCCAT                                  >  19:5574/1‑101
                                                                             ACTGGCTAAGGTGCTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGAACTATTCAGCATGGCTTTGGTTTCTTTTCCAT                                  >  4:5574/1‑101
                                                                                          CTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGT                     >  25:798441/1‑101
                                                                                          CTAAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGT                     >  10:798441/1‑101
                                                                                            AAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGC                   >  1:263602/1‑101
                                                                                            AAACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGC                   >  16:263602/1‑101
                                                                                             AACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTAAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCTCATTAAAGACACGGGTGCC                  >  27:931376/1‑101
                                                                                             AACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTAAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCTCATTAAAGACACGGGTGCC                  >  12:931376/1‑101
                                                                                              ACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCT                 >  23:393468/1‑101
                                                                                              ACATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCT                 >  8:393468/1‑101
                                                                                              ACATTTCAACAACGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGACATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCT                 >  3:1181397/1‑101
                                                                                              ACATTTCAACAACGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGACATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCT                 >  18:1181397/1‑101
                                                                                               CATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTT                >  23:1061323/1‑101
                                                                                               CATTTCAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTT                >  8:1061323/1‑101
                                                                                                      ACACCGCCAATGACACCCCATAAGTAATCGCATTCAACGCCAGCCATATTCCTCATGGCTTGCGTCTCTATCCAATTAAAGACCCGGGTGCCTTCTGCTAA         >  9:683977/1‑101
                                                                                                      ACACCGCCAATGACACCCCATAAGTAATCGCATTCAACGCCAGCCATATTCCTCATGGCTTGCGTCTCTATCCAATTAAAGACCCGGGTGCCTTCTGCTAA         >  24:683977/1‑101
                                                                                                        ACCGCCAATGGCACCACCTACCCCACAGTGTTCAAAGCCAGCCATATTCATGGTGGGTTTGGTGTCTTTCACATTAAAGACCCGGCTGACTTCCGGTAATA       >  11:347538/1‑101
                                                                                                        ACCGCCAATGGCACCACCTACCCCACAGTGTTCAAAGCCAGCCATATTCATGGTGGGTTTGGTGTCTTTCACATTAAAGACCCGGCTGACTTCCGGTAATA       >  26:347538/1‑101
                                                                                                          CGCCAATGACACCACCTAAGTCATGGTGTTCACCGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     <  1:31929/101‑1
                                                                                                          CGCCAATGACACCACCTAAGTCATGGTGTTCACCGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     <  16:31929/101‑1
                                                                                                          CGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     <  29:262287/101‑1
                                                                                                          CGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     <  24:277772/101‑1
                                                                                                          CGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     >  24:15397/1‑101
                                                                                                          CGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     <  14:262287/101‑1
                                                                                                          CGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     >  9:15397/1‑101
                                                                                                          CGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGT     <  9:277772/101‑1
                                                                                                           GCCAATGACACCACCTAAGTCATAGTGTTGAACGCAAGCCATATGCCTGATGAGGTTGTTTTACATCCAATTAAAGACAGGGGTGGCTTCTGGTATTAGTg    >  17:82455/1‑100
                                                                                                           GCCAATGACACCACCTAAGTCATAGTGTTGAACGCAAGCCATATGCCTGATGAGGTTGTTTTACATCCAATTAAAGACAGGGGTGGCTTCTGGTATTAGTg    >  2:82455/1‑100
                                                                                                            CCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCC   <  24:320667/101‑1
                                                                                                            CCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCC   <  18:275756/101‑1
                                                                                                            CCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCC   <  3:275756/101‑1
                                                                                                            CCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCC   <  9:320667/101‑1
                                                                                                             CAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCCT  <  3:1052793/101‑1
                                                                                                             CAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCCT  <  18:1052793/101‑1
                                                                                                                                                                                                                  
CCTAGTGTGTCTTGCAACTTTGCCAGTTCTTTTTTAAACCAATCAACAACACTGCCTGTCAATTTGTTAATAACACCACTGGCTAAGTTGCTAAACATTTCAACACCGCC....................................................................................................  >  NC_013198/1539492‑1539601
....................................................................................................CAACACCGCCAATGACACCACCTAAGTCATAGTGTTCAACGCCAGCCATATTCATGATGGCTTTGGTTTCTTTCCCATTAAAGACACGGGTGCCTTCTGGTAATAGTCCT  >  NC_013198/1539722‑1539821

Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG