New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? NC_013198 1998770 =334 (0.556)34 (0.057) 12/192 11.9 intergenic (+363/‑314) lciIC/LGG_01955 XRE family transcriptional regulator/reverse transcriptase‑like protein
?NC_013198 = 1998886 1450 (2.317)intergenic (+479/‑198) lciIC/LGG_01955 XRE family transcriptional regulator/reverse transcriptase‑like protein
Continuation Left: 0  Continuation Right: 0
Rejected: Position hash score below cutoff.

Only 100 of 116 total aligned reads displayed.

CCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT...........................................................................................................  <  NC_013198/1998866‑1998770
.............................................................................................C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  <  NC_013198/1998886‑1998787
                                                                                                                                                                                                                
CCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAG                                                                                                  >  8:1184332/1‑101
CCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAG                                                                                                  >  6:971239/1‑101
  ATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATTTA......TAGT                                                                                                 >  4:1151929/1‑101
  ATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATTTA......TAGT                                                                                                 >  19:1151929/1‑101
      GGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGT                                                                                            >  8:564696/1‑101
      GGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGT                                                                                            >  23:564696/1‑101
         GAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGT                                                                                         >  7:20989/1‑101
         GAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGT                                                                                         >  29:778081/1‑101
         GAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGT                                                                                         >  22:20989/1‑101
          AACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTT                                                                                        >  27:473926/1‑101
          AACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTT                                                                                        >  12:473926/1‑101
                CAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAG                                                                                  >  5:911936/1‑101
                CAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAG                                                                                  >  20:911936/1‑101
                 cAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGC                                                                                 >  6:107477/2‑101
                 cAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGC                                                                                 >  21:107477/2‑101
                     aAATGAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATA                                                                             >  16:479180/2‑101
                     aAATGAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATA                                                                             >  1:479180/2‑101
                                  GTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCTAACATT.A......TAGTTTGGTCGTTTGTCAGCCCTAAAGAGAACA                                                                    >  25:1171984/1‑101
                                  GTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCTAACATT.A......TAGTTTGGTCGTTTGTCAGCCCTAAAGAGAACA                                                                    >  10:1171984/1‑101
                                  GTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCA                                                                >  16:350062/1‑101
                                  GTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCA                                                                >  1:350062/1‑101
                                     TCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAAT                                                             >  11:1008783/1‑101
                                     TCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAAT                                                             >  26:1008783/1‑101
                                                  ACAGCATTATCGAGCAAATATGCTTGACATTACCAGAGGCTGGC....ATT.A......TAGTTGTGTTGTTAGTCAGCCATAAGGAGAACAGCCCAATGAATAAATACATC                                                >  24:891226/1‑101
                                                       ATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTC                                           >  7:373260/1‑101
                                                       ATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTC                                           >  22:373260/1‑101
                                                                  AATATGCTTGACATTACCAGCGGCTGGC....ATT.AACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCAC                                      >  5:98763/1‑101
                                                                  AATATGCTTGACATTACCAGCGGCTGGC....ATT.AACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCAC                                      >  20:98763/1‑101
                                                                                       GGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATAT           >  24:119783/1‑101
                                                                                       GGCTGGC....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATAT           >  9:119783/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  1:716673/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  7:1103048/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  22:1103048/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  23:1047946/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  8:1047946/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  29:1141637/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  16:716673/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  1:269924/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  14:1141637/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  16:269924/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATACTTGA     >  1:83893/1‑101
                                                                                             C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATACTTGA     >  16:83893/1‑101
                                                                                                 aATT.A......TATTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  13:504334/2‑101
                                                                                                 aATT.A......TATTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  28:504334/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  18:748017/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  8:680071/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  12:56705/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  26:990030/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  27:56705/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  29:1036270/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  29:662657/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  11:990030/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  3:748017/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  7:285109/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  5:12632/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  14:662657/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  20:12632/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  14:1036270/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  21:568203/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  22:285109/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGA     >  23:680071/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGATTGA     >  18:479418/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGATTGA     >  3:479418/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCAAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGTTTGA     >  18:308009/2‑101
                                                                                                 aATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCAAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGTTTGA     >  3:308009/2‑101
                                                                                                 aATT.A......TAGT.G.GTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTCACAGCATTATCGAGCAAATATGATTGACA   >  10:184146/2‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  24:1054929/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  10:994435/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  4:30228/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  25:318647/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  4:10197/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  25:906650/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  9:1054929/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  19:30228/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  19:10197/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  27:789005/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  12:789005/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  10:318647/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  25:994435/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGAC    >  10:906650/1‑101
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGAACATGCTAACAGCATTATCGAGCAAATATGCTTGAa    >  29:515945/1‑100
                                                                                                  ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGAACATGCTAACAGCATTATCGAGCAAATATGCTTGAa    >  14:515945/1‑100
                                                                                                   TT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA   >  26:1121285/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA   >  5:1006246/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA   >  23:7719/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA   >  23:106223/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA   >  13:26528/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA   >  8:7719/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTAAGCCATAAGGCGAACAAGCAAATGAATAAATACATCGTGTGTGGACGTGTTAAGACCATTATATACCAAATATGCTTGACA   >  16:1036247/1‑101
                                                                                                   TT.A......TAGTTGTGTCGTTAGTAAGCCATAAGGCGAACAAGCAAATGAATAAATACATCGTGTGTGGACGTGTTAAGACCATTATATACCAAATATGCTTGACA   >  1:1036247/1‑101
                                                                                                    T.A......TGGTTTTGTCGTATATAAGCCATAAGCGTAACAGCCAACTGTTTAATCTCATCCTTTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  <  11:749106/101‑1
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  <  10:9332/101‑1
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  >  5:577357/1‑101
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  >  4:811924/1‑101
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  <  27:952961/101‑1
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  <  25:9332/101‑1
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  >  20:577357/1‑101
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  >  19:811924/1‑101
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGAGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  >  12:1051217/1‑101
                                                                                                    T.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGAGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  >  27:1051217/1‑101
                                                                                                                                                                                                                
CCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGC....ATT...........................................................................................................  <  NC_013198/1998866‑1998770
.............................................................................................C....ATT.A......TAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACAT  <  NC_013198/1998886‑1998787

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG