New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 2145417	922 (1.503)	52 (0.085)	11/196	12.4	intergenic (‑47/+906)	LGG_02087/hyuA	N‑acetylmuramoyl‑L‑alanine amidase/hydantoinase/oxoprolinase
	?	NC_013198	= 2145488	1104 (1.764)				intergenic (‑118/+835)	LGG_02087/hyuA	N‑acetylmuramoyl‑L‑alanine amidase/hydantoinase/oxoprolinase
Continuation Left: 0  Continuation Right: 0
Rejected: Position hash score below cutoff.

TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATCA.....................................................................................................  >  NC_013198/2145316‑2145417 ....................................................................................................CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  <  NC_013198/2145488‑2145389                                                                                                                                                                                                             TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  17:307721/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  25:600504/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  4:1145542/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  19:1145542/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  27:1191393/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  2:307721/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  12:1191393/101‑1 TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATC                                                                                                        <  10:600504/101‑1                                                                                       cTATCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGAT                 <  11:350340/100‑1                                                                                       cTATCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGAT                 <  26:350340/100‑1                                                                                       cTATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGAT                 <  7:159743/100‑1                                                                                       cTATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGAT                 <  28:192138/100‑1                                                                                       cTATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGAT                 <  13:192138/100‑1                                                                                       cTATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGAT                 <  22:159743/100‑1                                                                                        TATCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATA                <  23:337753/101‑1                                                                                        TATCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATA                <  8:337753/101‑1                                                                                        TATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATA                <  29:468042/101‑1                                                                                        TATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATA                <  14:468042/101‑1                                                                                        TATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATA                <  22:623805/101‑1                                                                                        TATCGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATA                <  7:623805/101‑1                                                                                         ATCGTTGTATAGCACTGTACATAACCAA.TTCCCAGCCTTATCAAATCCACCTCAACCTCTTTACATCCTTCAGGTATAAATAAACTGATATACAGCGATAA               <  27:883351/101‑1                                                                                         ATCGTTGTATAGCACTGTACATAACCAA.TTCCCAGCCTTATCAAATCCACCTCAACCTCTTTACATCCTTCAGGTATAAATAAACTGATATACAGCGATAA               <  12:883351/101‑1                                                                                          TCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAAC              <  28:377357/101‑1                                                                                          TCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAAC              <  13:377357/101‑1                                                                                          TCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAAC              <  4:832319/101‑1                                                                                          TCGTTGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAAC              <  19:832319/101‑1                                                                                           CGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACA             <  5:145746/101‑1                                                                                           CGTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACA             <  20:145746/101‑1                                                                                            GTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAA            <  4:890345/101‑1                                                                                            GTTGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAA            <  19:890345/101‑1                                                                                              TGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACCATC          <  13:173712/101‑1                                                                                              TGTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACCATC          <  28:173712/101‑1                                                                                              TGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATC          <  6:755113/101‑1                                                                                              TGTATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATC          <  21:755113/101‑1                                                                                               GTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCA         <  24:62416/101‑1                                                                                               GTATATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCA         <  9:62416/101‑1                                                                                               GTAGATCACTTGACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCA         <  29:557952/101‑1                                                                                               GTAGATCACTTGACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCA         <  14:557952/101‑1                                                                                                TATATCACTTTACAAAACCAA.TCCCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCAT        <  26:1229750/101‑1                                                                                                TATATCACTTTACAAAACCAA.TCCCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCAT        <  11:1229750/101‑1                                                                                                TATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCAT        <  5:680565/101‑1                                                                                                TATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCAT        <  20:680565/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATA       <  5:481075/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATA       <  20:481075/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATA       <  26:933669/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATA       <  11:933669/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCGCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATA       <  27:223036/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCGCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATA       <  12:223036/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTGTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACGGATATTCAACGATAACAATCATA       <  3:78587/101‑1                                                                                                 ATAGCACTTTACACAACCAA.TACCCAACCTTGTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACGGATATTCAACGATAACAATCATA       <  18:78587/101‑1                                                                                                   ATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATT     <  29:977377/101‑1                                                                                                   ATCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATT     <  14:977377/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  13:57779/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  28:57779/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  2:497620/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  17:171724/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  2:171724/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  17:497620/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTGCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  29:557090/101‑1                                                                                                    TCACTTTACACAACCAA.TACCCAACCTTTGCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTT    <  14:557090/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAGCCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  3:710328/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAGCCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  18:710328/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATTCAACGATAACAATCATATTTT   <  16:553042/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATTCAACGATAACAATCATATTTT   <  1:553042/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  5:554432/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  2:511268/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  2:960042/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  3:76316/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  3:362466/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  6:646286/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  9:9239/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  20:554432/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  12:329784/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  11:88193/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  16:771438/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  17:511268/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  17:960042/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  18:362466/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  18:76316/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  1:771438/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  21:646286/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  24:9239/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  11:870805/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  26:870805/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  26:88193/101‑1                                                                                                     CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTT   <  27:329784/101‑1                                                                                                      ACTTTACACCACCAA.TACCCAACCTTTTCAAAACCAACTCAACATCTTTACATCCTTTAGGTGTAAATAAACTGATATACAACCATAACAATCACATTTTA  >  26:215273/1‑101                                                                                                      ACTTTACACCACCAA.TACCCAACCTTTTCAAAACCAACTCAACATCTTTACATCCTTTAGGTGTAAATAAACTGATATACAACCATAACAATCACATTTTA  >  11:215273/1‑101                                                                                                      ACTTTACACAACCAC.TACCCAACCTTCTCAAAACCACTACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  >  27:808179/1‑101                                                                                                      ACTTTACACAACCAC.TACCCAACCTTCTCAAAACCACTACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  >  12:808179/1‑101                                                                                                      ACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  <  25:45115/101‑1                                                                                                      ACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  <  10:45115/101‑1                                                                                                      ACTTT.CACAAACAAATCCCCAACCTTGTCAAACCCACCACAACCTCTTTACATCCTTTATGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  <  12:1055664/101‑1                                                                                                      ACTTT.CACAAACAAATCCCCAACCTTGTCAAACCCACCACAACCTCTTTACATCCTTTATGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  <  27:1055664/101‑1                                                                                                                                                                                                             TCAAAGCCGCCATCAACAGCAGGCTGCCAACCACCGTCCATCTTTTCCTAACCATCCGTCATCCTCCTACATGTAAAATATGATTGTTATCGTTGTATATCA.....................................................................................................  >  NC_013198/2145316‑2145417 ....................................................................................................CACTTTACACAACCAA.TACCCAACCTTTTCAAAACCACCACAACCTCTTTACATCCTTTAGGTATAAATAAACTGATATACAACGATAACAATCATATTTTA  <  NC_013198/2145488‑2145389 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG