New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? NC_013198 1998770 =432 (0.567)30 (0.039) 12/194 10.4 intergenic (+363/‑314) lciIC/LGG_01955 XRE family transcriptional regulator/reverse transcriptase‑like protein
?NC_013198 = 1998901 2278 (2.900)intergenic (+494/‑183) lciIC/LGG_01955 XRE family transcriptional regulator/reverse transcriptase‑like protein
Continuation Left: 0  Continuation Right: 0
Rejected: Position hash score below cutoff.

Only 100 of 146 total aligned reads displayed.

TAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT.........................................................................................................................  <  NC_013198/1998863‑1998770
...........................................................................................ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  <  NC_013198/1998901‑1998802
                                                                                                                                                                                                                       
TAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........G                                                                                                        >  1:754480/1‑101
  AGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTT                                                                                                      >  18:747229/1‑101
  AGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTT                                                                                                      >  4:747229/1‑101
  AGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTT                                                                                                      >  26:1233933/1‑101
  AGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTT                                                                                                      >  12:1233933/1‑101
                     TAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..TT...TG.........GTTAACATTATAGTTGT..GTCGTTA                                                                               >  20:959937/1‑101
                     TAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..TT...TG.........GTTAACATTATAGTTGT..GTCGTTA                                                                               >  6:959937/1‑101
                     TAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGT                                                                                 >  9:1226130/1‑101
                        ATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATTT.ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTA                                                                               >  10:527919/1‑101
                        ATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATTT.ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTA                                                                               >  24:527919/1‑101
                          ACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTC                                                                            >  19:175259/1‑101
                          ACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTC                                                                            >  5:175259/1‑101
                              CGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT...T...............TTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGG                                                                  >  15:372950/1‑101
                                              AACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TGTTTATGGGGGTTAACATTATTGTTGT..GTCGTTAGTCAGCCATAAGGA                                                                 >  3:980252/1‑101
                                              AACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT..ATAG.TGTTTATGGGGGTTAACATTATTGTTGT..GTCGTTAGTCAGCCATAAGGA                                                                 >  17:980252/1‑101
                                                    ATTATCGAGCAAATATGCTTGACATTACCAG.........TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACAT                                  >  15:550183/1‑101
                                                    ATTATCGAGCAAATATGCTTGACATTACCAG.........TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACAT                                  >  1:550183/1‑101
                                                                     CTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTG                          >  23:141400/1‑101
                                                                     CTTGACATTACCAGCGGCTGGCATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTG                          >  9:141400/1‑101
                                                                                  GCGGCTGGCATTTTATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAAC               >  11:655611/1‑101
                                                                                         aCATT..ATAGTTG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTAT       >  20:1204554/2‑101
                                                                                          nATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCG     >  11:791111/2‑101
                                                                                          nATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCG     >  25:791111/2‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTGGGTAGTCAGCCATAAGGAGAA......CAGCCAAAAGAATAAA.TACATGGGCTCTGCACTTTATAACAGCCTTATCGg    >  16:265305/1‑100
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTGGGTAGTCAGCCATAAGGAGAA......CAGCCAAAAGAATAAA.TACATGGGCTCTGCACTTTATAACAGCCTTATCGg    >  2:265305/1‑100
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAAATACATCGTGTCTGCACTTGCTAACAGCATTATCG     >  11:490843/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAAATACATCGTGTCTGCACTTGCTAACAGCATTATCG     >  25:490843/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  24:117308/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  3:352942/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  24:56893/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  25:19939/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  23:1025349/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  25:404154/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  2:19783/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  3:1245071/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  10:1104532/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  4:1212340/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  4:610679/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  5:447038/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  6:185940/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  6:224448/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  6:568007/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  9:1025349/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  17:1245071/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  10:117308/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  10:56893/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  11:19939/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  11:404154/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  12:1054381/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  15:158473/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  16:19783/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  17:352942/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  18:1212340/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  18:610679/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  19:447038/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGA    >  20:224448/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATAGTGTCTGCACTTGCTAACAGCATTATCGA    >  23:654681/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGGTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACAAAGTGTCGGCACTTGCTAACAGCATTATCGA    >  27:986823/1‑101
                                                                                           ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGGTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACAAAGTGTCGGCACTTGCTAACAGCATTATCGA    >  13:986823/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  20:608363/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  3:1126453/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  22:652664/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  16:1095817/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  15:174391/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  21:421214/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  5:50170/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  11:585095/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  1:309602/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  6:608363/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  6:760943/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  6:814386/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  7:421214/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  8:652664/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  20:814386/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  17:1126453/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  20:760943/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  2:1095817/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  1:174391/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  19:50170/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  25:585095/1‑101
                                                                                            TT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  23:1186283/1‑101
                                                                                            TT..AGAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  10:301913/1‑101
                                                                                            TT..AGAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAG   >  24:301913/1‑101
                                                                                             T..ATAG.TT.........GTTTACATTATAGTTTT..GTAGTTAGTGAGCCATGAGGAGAA......CAGCTAAATGAATAAA.TAGAACGTATCTGCACATGCTAACAGCATTATCGAGt  >  7:389266/1‑100
                                                                                             T..ATAG.TT.........GTTTACATTATAGTTTT..GTAGTTAGTGAGCCATGAGGAGAA......CAGCTAAATGAATAAA.TAGAACGTATCTGCACATGCTAACAGCATTATCGAGt  >  21:389266/1‑100
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGTTTGTCGTTAGTCAGCCATAAGGAGAAGGAGAACAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCAT          >  4:242729/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGTTTGTCGTTAGTCAGCCATAAGGAGAAGGAGAACAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCAT          >  18:242729/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGa  >  2:3850/1‑100
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGa  >  16:3850/1‑100
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  25:626105/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  26:1043777/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  6:774865/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  20:46648/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  6:909353/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  20:909353/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  12:237797/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  13:242682/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  26:237797/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  27:242682/1‑101
                                                                                             T..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  >  20:774865/1‑101
                                                                                                                                                                                                                       
TAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT.........................................................................................................................  <  NC_013198/1998863‑1998770
...........................................................................................ATT..ATAG.TG.........GTTAACATTATAGTTGT..GTCGTTAGTCAGCCATAAGGAGAA......CAGCCAAATGAATAAA.TACATCGTGTCTGCACTTGCTAACAGCATTATCGAGC  <  NC_013198/1998901‑1998802

Base quality scores:  ATCG  < 3 ≤  ATCG  < 25 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG