| New junction evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | 1998841 = | 2252 (2.867) | 36 (0.048) | 15/192 | 9.5 | intergenic (+434/‑243) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998844 | 2296 (2.923) | intergenic (+437/‑240) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| Continuation Left: 0 Continuation Right: 4 | ||||||||||
| Rejected: Position hash score below cutoff. | ||||||||||
ATCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATA..................................................................... < NC_013198/1998940‑1998841
.....................................................................................................AAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTAC < NC_013198/1998844‑1998784
ATCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGCACAGCCAAATGAATAA < 13:1126347/101‑1
ATCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGCACAGCCAAATGAATAA < 27:1126347/101‑1
ATCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAA > 10:169095/1‑101
ATCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAA > 24:169095/1‑101
ATCATTGTCTGACAGATGAATAAACTTAACATT.ACAATTATAGTGGTTCACCTTATAGTTGTGTCGTTATTCAGACATAACGAGAACAGGCAAATGAATAA > 10:1069903/1‑101
ATCATTGTCTGACAGATGAATAAACTTAACATT.ACAATTATAGTGGTTCACCTTATAGTTGTGTCGTTATTCAGACATAACGAGAACAGGCAAATGAATAA > 24:1069903/1‑101
TCATTGTCTGACAGATGAATACAATTAACATT.TCAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAA < 27:736661/101‑1
TCATTGTCTGACAGATGAATACAATTAACATT.TCAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAA < 13:736661/101‑1
TCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAA < 28:217710/101‑1
TCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAA < 14:217710/101‑1
TCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAA > 11:1237332/1‑101
TCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAA > 25:1237332/1‑101
CATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT < 20:299161/101‑1
CATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT < 24:434744/101‑1
CATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT < 6:299161/101‑1
CATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT < 10:434744/101‑1
ATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A > 21:911786/1‑101
ATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A > 7:911786/1‑101
ATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A < 6:679532/101‑1
ATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A < 20:679532/101‑1
ATTGTCTGACAGATGAATACAATTAACATT.AAAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCAATCAGGAGAACAGCCAAATGAATAAAT....A > 12:413491/1‑101
ATTGTCTGACAGATGAATACAATTAACATT.AAAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCAATCAGGAGAACAGCCAAATGAATAAAT....A > 26:413491/1‑101
ATTGTCTGACAGATGAATACAATTAACAGG.ACAATTATAGTGGTTAACATTATAGTTGGGTCGTTAGTCAGCCATAAGGAGGACAGCCAAATGAATAAAT....A > 27:72609/1‑101
ATTGTCTGACAGATGAATACAATTAACAGG.ACAATTATAGTGGTTAACATTATAGTTGGGTCGTTAGTCAGCCATAAGGAGGACAGCCAAATGAATAAAT....A > 13:72609/1‑101
ATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGC > 7:26338/1‑101
ATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGC > 21:26338/1‑101
ATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGC > 7:824720/1‑101
ATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGC > 21:824720/1‑101
AATTTACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 5:1109192/1‑101
AATTTACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 19:1109192/1‑101
AATTAACATTTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACT > 4:738177/1‑101
AATTAACATTTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACT > 18:738177/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATGAATAAATA....CATCGTGTCTGC > 8:373980/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATGAATAAATA....CATCGTGTCTGC > 22:373980/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....ACATA....CATCGTGTCTGCACTT > 22:616233/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....ACATA....CATCGTGTCTGCACTT > 8:616233/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 7:1130833/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 13:110315/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 27:110315/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 21:1130833/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 5:529893/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 5:718962/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 19:718962/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 19:529893/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGACAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 17:1125553/1‑101
AATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGACAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT > 3:1125553/1‑101
AATTA.CATT.ACAATTATAGTGGTTAACATTATAGTTGTGTGGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTG > 12:283296/1‑101
AATTA.CATT.ACAATTATAGTGGTTAACATTATAGTTGTGTGGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTG > 26:283296/1‑101
AATTA.CATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTG > 24:494930/1‑101
AATTA.CATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTG > 10:494930/1‑101
gCATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAA > 12:640556/2‑101
gCATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAA > 26:640556/2‑101
aATT.ACAATTATAGTGGTTAAGATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATAAATACATCGTGTCTGCACTTGC > 27:445101/2‑101
aATT.ACAATTATAGTGGTTAAGATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATAAATACATCGTGTCTGCACTTGC > 13:445101/2‑101
aATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATGAATAAATA....CATCGTGTCTGCACTTGC > 26:359210/2‑101
aATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATGAATAAATA....CATCGTGTCTGCACTTGC > 12:359210/2‑101
aATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC > 21:593381/2‑101
aATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC > 7:593381/2‑101
ATT.CCAATTATAGTGGTTAACATTATAGTTGTGTCGTTCGTCAGCCATAAGGAGTACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACA > 9:304264/1‑101
ATT.CCAATTATAGTGGTTAACATTATAGTTGTGTCGTTCGTCAGCCATAAGGAGTACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACA > 23:304264/1‑101
AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT > 15:986606/1‑101
AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT > 1:986606/1‑101
ATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCG > 20:460489/1‑101
ATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCG > 6:460489/1‑101
TAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGA > 11:1172051/1‑101
TAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGA > 25:1172051/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 5:358045/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 15:752604/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 16:596801/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 19:1022472/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 6:1052884/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 19:358045/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 5:1022472/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 20:1052884/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 2:596801/1‑101
AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAG > 1:752604/1‑101
GTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGC > 25:416465/1‑101
GTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGC > 11:416465/1‑101
GTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAA > 5:140343/1‑101
GTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAA > 19:140343/1‑101
TTAACATTATAGTTGTGTCGTTAGTAAGCCATAAGGAGACAAGCCAAATGAATAAAT....AAATA....CATCGAGTCTGCACTTGATAACAGCATTATCGAGCAAAa > 25:423198/1‑100
TTAACATTATAGTTGTGTCGTTAGTAAGCCATAAGGAGACAAGCCAAATGAATAAAT....AAATA....CATCGAGTCTGCACTTGATAACAGCATTATCGAGCAAAa > 11:423198/1‑100
TAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATA > 27:1081819/1‑101
TAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATA > 13:1081819/1‑101
AACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATAT > 6:346033/1‑101
AACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATAT > 20:346033/1‑101
TTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTT > 22:858352/1‑101
TTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTT > 8:858352/1‑101
TTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....ACATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATT > 5:1042577/1‑101
TTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....ACATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATT > 19:1042577/1‑101
GTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTAC > 27:1142166/1‑101
GTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTAC > 13:1142166/1‑101
GTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTAC > 19:432803/1‑101
GTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTAC > 5:432803/1‑101
ATCATTGTCTGACAGATGAATACAATTAACATT.ACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATA..................................................................... < NC_013198/1998940‑1998841
.....................................................................................................AAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTAC < NC_013198/1998844‑1998784
Base quality scores:
ATCG
< 3 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 36 ≤
ATCG
< 41 ≤
ATCG
|