New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	201277 =	558 (0.717)	70 (0.094)	13/190	10.0	intergenic (+252/‑268)	LGG_00189/ackA	recombination factor protein RarA/acetate kinase
	?	NC_013198	= 1055486	1050 (1.337)				intergenic (+85/+49)	LGG_01041/LGG_01042	hypothetical protein/hypothetical protein
Continuation Left: 0  Continuation Right: 4
Rejected: Position hash score below cutoff.

GTTTCTGGGCTGGCGAACGCGTT........................................................................................  <  NC_013198/201299‑201277 ........................TGAGCGTGAGCTGGCGCGGTTAGGGATCGGAGTGTAAGCGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  <  NC_013198/1055486‑1055400                        |                                                                                        GTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGAC            <  17:524834/101‑1 GTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGAC            <  3:524834/101‑1 GTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGGGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGAC            >  18:423930/1‑101 GTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGGGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGAC            >  4:423930/1‑101  TTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACC           <  1:934957/101‑1  TTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACC           <  18:622328/101‑1  TTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACC           >  11:783547/1‑101  TTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACC           >  25:783547/1‑101  TTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACC           <  4:622328/101‑1  TTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACC           <  15:934957/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  26:740210/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  20:531417/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  26:1214969/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  26:224961/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  12:740210/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  12:224961/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  12:1214969/101‑1   TTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCA          <  6:531417/101‑1    TCTGGGCTGGGGAACGCGTTATGAGCGTGAGCCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAA         >  13:686726/1‑101    TCTGGGCTGGGGAACGCGTTATGAGCGTGAGCCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAA         >  27:686726/1‑101    TCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAA         >  3:1169173/1‑101    TCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAA         >  17:1169173/1‑101    TCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAA         >  23:328448/1‑101    TCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAA         >  9:328448/1‑101     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        >  22:994645/1‑101     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        <  26:465447/101‑1     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        <  25:1078773/101‑1     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        <  7:138365/101‑1     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        <  21:138365/101‑1     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        >  8:994645/1‑101     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        <  11:1078773/101‑1     CTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAG        <  12:465447/101‑1      TGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGG       <  21:447576/101‑1      TGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGG       <  7:447576/101‑1      TGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGG       >  11:486806/1‑101      TGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGG       >  12:63571/1‑101      TGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGG       >  25:486806/1‑101      TGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGG       >  26:63571/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGCTCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  2:1133145/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGCTCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  16:1133145/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  27:53843/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  8:387328/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  7:736829/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      <  2:979596/101‑1       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  13:53843/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      <  16:979596/101‑1       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  21:736829/1‑101       GGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  22:387328/1‑101       GGGCTGGCGAACGCGCTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGCGTAAGTGGCCTTAGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  17:227809/1‑101       GGGCTGGCGAACGCGCTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGCGTAAGTGGCCTTAGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGT      >  3:227809/1‑101        GGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTC     <  24:241857/101‑1        GGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTC     <  4:518262/101‑1        GGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTC     <  18:518262/101‑1        GGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTC     <  10:241857/101‑1         GCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCC    >  11:693900/1‑101         GCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCC    >  17:1167374/1‑101         GCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCC    >  25:693900/1‑101         GCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCC    >  3:1167374/1‑101          CTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCT   <  6:590380/101‑1          CTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCT   <  25:1177497/101‑1          CTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCT   <  20:590380/101‑1          CTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCT   <  11:1177497/101‑1           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  >  19:948497/1‑101           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  >  1:1179922/1‑101           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  >  5:948497/1‑101           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  <  12:540362/101‑1           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  <  12:622383/101‑1           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  >  15:1179922/1‑101           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  <  26:622383/101‑1           TGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  <  26:540362/101‑1                        |                                                                                        GTTTCTGGGCTGGCGAACGCGTT........................................................................................  <  NC_013198/201299‑201277 ........................TGAGCGTGAGCTGGCGCGGTTAGGGATCGGAGTGTAAGCGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTT  <  NC_013198/1055486‑1055400 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG