| New junction evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | 1998770 = | 336 (0.644) | 50 (0.096) | 16/200 | 4.0 | intergenic (+363/‑314) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein |
| ? | NC_013198 | = 1998910 | 1266 (2.426) | intergenic (+503/‑174) | lciIC/LGG_01955 | XRE family transcriptional regulator/reverse transcriptase‑like protein | ||||
| Continuation Left: 0 Continuation Right: 0 | ||||||||||
| Rejected: Position hash score below cutoff. | ||||||||||
CATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T........................................................................................................ < NC_013198/1998865‑1998770
..............................................................................................................A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGC < NC_013198/1998910‑1998812
CATAAGGAGAACAGCCAAATGAATAAATACATCTTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACAAGCGGCTGGAAT..T...A..TTAa > 31:832033/1‑100
CATAAGGAGAACAGCCAAATGAATAAATACATCTTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACAAGCGGCTGGAAT..T...A..TTAa > 15:832033/1‑100
AGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATT > 23:877730/1‑101
AGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATT > 7:877730/1‑101
AAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCATGGC...A..TTACAATTATAGTGGTTA > 31:280290/1‑101
AAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCATGGC...A..TTACAATTATAGTGGTTA > 15:280290/1‑101
AAATGAATAAATACA..GTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..TGGCA..TTACAATTATAGTGGTTAA > 29:510584/1‑101
AAATGAATAAATACA..GTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..TGGCA..TTACAATTATAGTGGTTAA > 13:510584/1‑101
AATGAATAAATACATTGTGTCTGCCCTTGCTAACCGCATTGT.........CGAGCAAATATGCTTGAAATTACCAGCGGCCGAATT..T...T..TTACACTTATATGGGTTTACA > 27:1049543/1‑101
AATGAATAAATACATTGTGTCTGCCCTTGCTAACCGCATTGT.........CGAGCAAATATGCTTGAAATTACCAGCGGCCGAATT..T...T..TTACACTTATATGGGTTTACA > 11:1049543/1‑101
TGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..TCC.G..TTACAATTATAGTGGTTAACA > 8:852753/1‑101
TGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..TCC.G..TTACAATTATAGTGGTTAACA > 24:852753/1‑101
GAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACAAGCGCCTGGCAT..T...ACATTACAATTATAGTGGTTAACAT > 15:1070746/1‑101
GAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACAAGCGCCTGGCAT..T...ACATTACAATTATAGTGGTTAACAT > 31:1070746/1‑101
cAAATACATCGTGTCTGCACTTGCTAACAGCATTATTATTATTATCGGGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTA > 15:326369/2‑101
cAAATACATCGTGTCTGCACTTGCTAACAGCATTATTATTATTATCGGGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTA > 31:326369/2‑101
AAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGT > 17:968642/1‑101
AAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGT > 1:968642/1‑101
ATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..T.ACAATTATAGTGGTTAACATTATAGTTGT > 10:103961/1‑101
ATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..T.ACAATTATAGTGGTTAACATTATAGTTGT > 26:103961/1‑101
ACATCGTGTCTGCACTTGCTAACAGCATTATTAT......CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTT > 15:277134/1‑101
ACATCGTGTCTGCACTTGCTAACAGCATTATTAT......CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTT > 31:277134/1‑101
ACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCATGGC...A..TTACAATTATAGTGGTTAACATTATAGTTG > 27:1068524/1‑101
ACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCATGGC...A..TTACAATTATAGTGGTTAACATTATAGTTG > 11:1068524/1‑101
ACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTG > 3:203068/1‑101
ACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTG > 19:203068/1‑101
GCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAG > 15:1044621/1‑101
GCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAG > 31:1044621/1‑101
GCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGAGGCTGGAAT..GGC.A..TTCCAATTATAGTGGATAACATTATAGTTGAGTCGTTAGTC > 4:645707/1‑101
GCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGAGGCTGGAAT..GGC.A..TTCCAATTATAGTGGATAACATTATAGTTGAGTCGTTAGTC > 20:645707/1‑101
CACTTGATAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGAGACTGGAAT..T...A..TCAAAATTATAGTGGTTAACATTATCGTTTTGTCGTTAGTTAGC > 30:12386/1‑101
CACTTGATAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGAGACTGGAAT..T...A..TCAAAATTATAGTGGTTAACATTATCGTTTTGTCGTTAGTTAGC > 14:12386/1‑101
AACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCATGGC...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAG > 26:238137/1‑101
AACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCATGGC...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAG > 10:238137/1‑101
GCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAAC > 28:48917/1‑101
GCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAAC > 12:48917/1‑101
CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAA > 9:964926/1‑101
CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAA > 25:964926/1‑101
GCGGCTGGCAT..TTC.A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCA > 24:785206/1‑101
GCGGCTGGCAT..TTC.A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCA > 8:785206/1‑101
aAT..T...A..TTACAATTATAGTTCTTAACACTATAGATGTGTCGTTAGTGAGCCATAAGGACAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 29:244419/2‑101
aAT..T...A..TTACAATTATAGTTCTTAACACTATAGATGTGTCGTTAGTGAGCCATAAGGACAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 13:244419/2‑101
aAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGATAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 3:617133/2‑101
aAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGATAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 19:617133/2‑101
aAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 25:733975/2‑101
aAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 31:895895/2‑101
aAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 15:895895/2‑101
aAT..T...A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACA > 9:733975/2‑101
aT...A..TTACAATTGTGGTGGGTAGCATTATTGTTTTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACAGCGTGTCTGCACTTGCTAACAGC < 30:1238751/100‑1
aT...A..TTACAATTGTGGTGGGTAGCATTATTGTTTTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACAGCGTGTCTGCACTTGCTAACAGC < 14:1238751/100‑1
CATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGCATTAT.........CGAGCAAATATGCTTGACATTACCAGCGGCTGGCAT..T........................................................................................................ < NC_013198/1998865‑1998770
..............................................................................................................A..TTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAATACATCGTGTCTGCACTTGCTAACAGC < NC_013198/1998910‑1998812
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 28 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|