New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 2649643	256 (0.564)	38 (0.084)	18/174	3.4	intergenic (‑153/+86)	pepIP/LGG_02588	proline iminopeptidase/hypothetical protein
	?	NC_013198	2649766 =	216 (0.414)				coding (116/153 nt)	LGG_02588	hypothetical protein
Continuation Left: 0  Continuation Right: 0
Rejected: Position hash score below cutoff.

CGGCGCGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGG...................................................................................................  >  NC_013198/2649533‑2649643 ..................................................................................................GAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTT  >  NC_013198/2649766‑2649864                                                                                                                                                                                                                    CGGCGCGGTTAGGAACCGGAGTGTAAGCAGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAG                                                                                                               >  10:296390/1‑101 CGGCGCGGTTAGGAACCGGAGTGTAAGCAGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAG                                                                                                               >  26:296390/1‑101 CGGCGCGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAG                                                                                                               >  25:427820/1‑101 CGGCGCGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAG                                                                                                               >  9:427820/1‑101      CGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGT                                                                                                          <  22:412365/101‑1      CGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGT                                                                                                          <  6:412365/101‑1      CGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGT                                                                                                          >  3:440109/1‑101      CGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGT                                                                                                          >  19:440109/1‑101       aGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGCCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTT                                                                                                         <  13:262224/100‑1       aGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGCCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTT                                                                                                         <  29:262224/100‑1         TTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGATCGCGTTAT                                                                                                       <  9:1080744/101‑1         TTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGATCGCGTTAT                                                                                                       <  25:1080744/101‑1         TTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTAT                                                                                                       >  28:1066256/1‑101         TTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTAT                                                                                                       >  12:1066256/1‑101         TTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTAT                                                                                                       <  6:318207/101‑1         TTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTAT                                                                                                       <  22:318207/101‑1           AGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGG                                                                                                     >  1:661245/1‑101           AGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGG                                                                                                     >  17:661245/1‑101                                        TGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAG                                                                        <  12:533486/101‑1                                        TGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAG                                                                        <  28:533486/101‑1                                                  GCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCC                                                              <  17:986052/101‑1                                                  GCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCC                                                              <  1:986052/101‑1                                                      TGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGACGGGC                                                          >  21:1036033/1‑101                                                      TGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGACGGGC                                                          >  5:1036033/1‑101                                                        GCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTT                                                        >  27:617494/1‑101                                                        GCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTT                                                        >  11:617494/1‑101                                                          CATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTG                                                      >  29:109780/1‑101                                                          CATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTG                                                      >  13:109780/1‑101                                                                  TTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGC                                              <  25:8817/101‑1                                                                  TTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGC                                              <  9:8817/101‑1                                                                   TAAGGTCCTTACACGCAGGTTTCTGCGCAGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCG                                             >  21:298828/1‑101                                                                   TAAGGTCCTTACACGCAGGTTTCTGCGCAGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCG                                             >  5:298828/1‑101                                                                      GGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTT                                          <  1:656278/101‑1                                                                      GGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTT                                          <  17:656278/101‑1                                                                         CCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAG                                       <  31:286738/101‑1                                                                         CCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAG                                       >  26:248827/1‑101                                                                         CCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAG                                       >  10:248827/1‑101                                                                         CCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAG                                       <  15:286738/101‑1                                                                          CTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGG                                      <  13:894794/101‑1                                                                          CTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGG                                      <  29:894794/101‑1                                                                            TACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTC                                    <  17:8499/101‑1                                                                            TACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTC                                    <  1:8499/101‑1                                                                             ACACGCAGGTTTCTGCCCCGGGGAGCTCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCC                                   <  4:1138086/101‑1                                                                             ACACGCAGGTTTCTGCCCCGGGGAGCTCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCC                                   <  20:1138086/101‑1                                                                                   gGGTTTCTGCGCCGGGGAGCGCTTTATGGGCATAAGCCAGAATTTTAGCGGCCTTAAGCGTGAGGGCGGGGCTTTGGCCATTGCGCTTAAGGTCCTTACAC                             <  18:1203158/100‑1                                                                                   gGGTTTCTGCGCCGGGGAGCGCTTTATGGGCATAAGCCAGAATTTTAGCGGCCTTAAGCGTGAGGGCGGGGCTTTGGCCATTGCGCTTAAGGTCCTTACAC                             <  2:1203158/100‑1                                                                                    GGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACG                            >  3:325504/1‑101                                                                                    GGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACG                            >  19:325504/1‑101                                                                                    GGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGGTCTTGCCGGGCTTTGGCAATTGCGCTTAAGGAGCTTACACc                            >  24:871844/1‑100                                                                                    GGTTTCTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGGTCTTGCCGGGCTTTGGCAATTGCGCTTAAGGAGCTTACACc                            >  8:871844/1‑100                                                                                         CTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGT                       <  4:765962/101‑1                                                                                         CTGCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGT                       <  20:765962/101‑1                                                                                           GCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTT                     <  6:289377/101‑1                                                                                           GCGCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTT                     <  22:289377/101‑1                                                                                             GCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCT                   <  1:1211316/101‑1                                                                                             GCCGGGGAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCT                   <  17:1211316/101‑1                                                                                                   GAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCG             <  8:849120/101‑1                                                                                                   GAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCG             <  24:849120/101‑1                                                                                                     GCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGG           <  22:663694/101‑1                                                                                                     GCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGG           <  6:663694/101‑1                                                                                                         GTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGC       >  7:1199558/1‑101                                                                                                         GTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGC       >  23:1199558/1‑101                                                                                                           TATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGC     >  1:384586/1‑101                                                                                                           TATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGC     >  17:384586/1‑101                                                                                                           TATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGC     >  31:213311/1‑101                                                                                                           TATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGC     >  15:213311/1‑101                                                                                                           TATGGGAATAAGCCAGAACTGTAGCGCCCTCAATAGTGATGGCCGGGCTTTGGCCTTTGCGCTTAAGGACCTTAAACGACGGTTTCTGCTACGGGGAGCGC     >  30:352026/1‑101                                                                                                           TATGGGAATAAGCCAGAACTGTAGCGCCCTCAATAGTGATGGCCGGGCTTTGGCCTTTGCGCTTAAGGACCTTAAACGACGGTTTCTGCTACGGGGAGCGC     >  14:352026/1‑101                                                                                                              GGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTT  >  28:85183/1‑101                                                                                                              GGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTT  >  12:85183/1‑101                                                                                                                                                                                                                    CGGCGCGGTTAGAAACCGGAGTGTAAGCGGCCTTAAGCATGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTTATGG...................................................................................................  >  NC_013198/2649533‑2649643 ..................................................................................................GAGCGCGTTATGGGCATAAGCCAGAACTTTAGCGGCCTTAAGCGTGATGGCCGGGCTTTGGCCATTGCGCTTAAGGTCCTTACACGCAGGTTTCTGCGCCGGGGAGCGCGTT  >  NC_013198/2649766‑2649864 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG