New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	2649753 =	228 (0.502)	38 (0.084)	18/174	3.4	coding (129/153 nt)	LGG_02588	hypothetical protein
	?	NC_013198	= 2649855	268 (0.513)				coding (27/153 nt)	LGG_02588	hypothetical protein
Continuation Left: 0  Continuation Right: 0
Rejected: Position hash score below cutoff.

AACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTC..........................................................................................  <  NC_013198/2649864‑2649753 ...................................................................................................CCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  <  NC_013198/2649855‑2649766                                                                                                                                                                                                            AACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCC                                                                                                       <  12:85183/101‑1 AACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCC                                                                                                       <  28:85183/101‑1    GCGCTCCCCGTAGCAGAAACCGTCGTTTAAGGTCCTTAAGCGCAAAGGCCAAAGCCCGGCCATCACTATTGAGGGCGCTACAGTTCTGGCTTATTCCCATA                                                                                                    <  30:352026/101‑1    GCGCTCCCCGTAGCAGAAACCGTCGTTTAAGGTCCTTAAGCGCAAAGGCCAAAGCCCGGCCATCACTATTGAGGGCGCTACAGTTCTGGCTTATTCCCATA                                                                                                    <  14:352026/101‑1    GCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATA                                                                                                    <  1:384586/101‑1    GCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATA                                                                                                    <  15:213311/101‑1    GCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATA                                                                                                    <  31:213311/101‑1    GCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATA                                                                                                    <  17:384586/101‑1      GCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAAC                                                                                                  <  7:1199558/101‑1      GCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAAC                                                                                                  <  23:1199558/101‑1          CCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGC                                                                                              >  6:663694/1‑101          CCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGC                                                                                              >  22:663694/1‑101            CGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTC                                                                                            >  8:849120/1‑101            CGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTC                                                                                            >  24:849120/1‑101                  AGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGC                                                                                      >  17:1211316/1‑101                  AGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGC                                                                                      >  1:1211316/1‑101                    AAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGC                                                                                    >  22:289377/1‑101                    AAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGC                                                                                    >  6:289377/1‑101                      ACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAG                                                                                  >  20:765962/1‑101                      ACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAG                                                                                  >  4:765962/1‑101                           gGTGTAAGCTCCTTAAGCGCAATTGCCAAAGCCCGGCAAGACCGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACC                                                                             <  24:871844/100‑1                           gGTGTAAGCTCCTTAAGCGCAATTGCCAAAGCCCGGCAAGACCGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACC                                                                             <  8:871844/100‑1                           CGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACC                                                                             <  19:325504/101‑1                           CGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACC                                                                             <  3:325504/101‑1                            GTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCCGCCCTCACGCTTAAGGCCGCTAAAATTCTGGCTTATGCCCATAAAGCGCTCCCCGGCGCAGAAACCc                                                                            >  2:1203158/1‑100                            GTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCCGCCCTCACGCTTAAGGCCGCTAAAATTCTGGCTTATGCCCATAAAGCGCTCCCCGGCGCAGAAACCc                                                                            >  18:1203158/1‑100                                  GGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGAGCTCCCCGGGGCAGAAACCTGCGTGT                                                                      >  20:1138086/1‑101                                  GGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGAGCTCCCCGGGGCAGAAACCTGCGTGT                                                                      >  4:1138086/1‑101                                   GACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTA                                                                     >  1:8499/1‑101                                   GACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTA                                                                     >  17:8499/1‑101                                     CCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAG                                                                   >  29:894794/1‑101                                     CCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAG                                                                   >  13:894794/1‑101                                      CTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGG                                                                  >  31:286738/1‑101                                      CTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGG                                                                  <  10:248827/101‑1                                      CTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGG                                                                  <  26:248827/101‑1                                      CTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGG                                                                  >  15:286738/1‑101                                         AAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACC                                                               >  1:656278/1‑101                                         AAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACC                                                               >  17:656278/1‑101                                            CGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCTGCGCAGAAACCTGCGTGTAAGGACCTTA                                                            <  21:298828/101‑1                                            CGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCTGCGCAGAAACCTGCGTGTAAGGACCTTA                                                            <  5:298828/101‑1                                             GCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAA                                                           >  9:8817/1‑101                                             GCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAA                                                           >  25:8817/1‑101                                                     CAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATG                                                   <  13:109780/101‑1                                                     CAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATG                                                   <  29:109780/101‑1                                                       AAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGC                                                 <  27:617494/101‑1                                                       AAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGC                                                 <  11:617494/101‑1                                                         GCCCGTCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCA                                               <  21:1036033/101‑1                                                         GCCCGTCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCA                                               <  5:1036033/101‑1                                                             GGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGC                                           >  17:986052/1‑101                                                             GGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGC                                           >  1:986052/1‑101                                                                       CTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCA                                 >  28:533486/1‑101                                                                       CTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCA                                 >  12:533486/1‑101                                                                                                    CCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTAT    >  20:1009066/1‑101                                                                                                    CCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTAT    <  25:479251/101‑1                                                                                                    CCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTAT    <  9:479251/101‑1                                                                                                    CCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTAT    >  4:1009066/1‑101                                                                                                     CATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATG   >  29:391247/1‑101                                                                                                     CATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATG   >  13:391247/1‑101                                                                                                     CATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGGTCTGGCTTATG   >  30:663615/1‑101                                                                                                     CATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGGTCTGGCTTATG   >  14:663615/1‑101                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACTTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  >  4:1189555/1‑101                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACTTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  >  20:1189555/1‑101                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  <  19:924800/101‑1                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  <  5:968519/101‑1                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  <  3:924800/101‑1                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  >  3:769626/1‑101                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  <  21:968519/101‑1                                                                                                      ATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  >  19:769626/1‑101                                                                                                                                                                                                            AACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGCCCATAACGCGCTC..........................................................................................  <  NC_013198/2649864‑2649753 ...................................................................................................CCATAACGCGCTCCCCGGCGCAGAAACCTGCGTGTAAGGACCTTAAGCGCAATGGCCAAAGCCCGGCCATCACGCTTAAGGCCGCTAAAGTTCTGGCTTATGC  <  NC_013198/2649855‑2649766 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 28 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG