New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? NC_013198 1998841 =2028 (3.443)4 (0.007) 14/192 7.7 intergenic (+434/‑243) lciIC/LGG_01955 XRE family transcriptional regulator/reverse transcriptase‑like protein
?NC_013198 = 1998844 2038 (3.460)intergenic (+437/‑240) lciIC/LGG_01955 XRE family transcriptional regulator/reverse transcriptase‑like protein
Continuation Left: 0  Continuation Right: 4
Rejected: Position hash score below cutoff.

Only 100 of 116 total aligned reads displayed.

ATCATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATA...................................................................................  <  NC_013198/1998940‑1998841
....................................................................................................AAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT  <  NC_013198/1998844‑1998770
                                                                                                                                                                                       
ATCATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAA                                                                                    <  16:137727/101‑1
ATCATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAA                                                                                    >  7:67723/1‑101
ATCATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAA                                                                                    >  18:67723/1‑101
ATCATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAA                                                                                    <  5:137727/101‑1
  tATTTTCTGACAGATGAATACAATTAACTTCATACTGAGAGGAGTTAACGTTGTAGTTGTCTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  1:1093782/100‑1
  tATTTTCTGACAGATGAATACAATTAACTTCATACTGAGAGGAGTTAACGTTGTAGTTGTCTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  12:1093782/100‑1
  CATTGTCTGACAGATGAATACAATTAACATTACAATTATATTGGTAAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAACGAATAAAT                                                                                  <  19:1117775/101‑1
  CATTGTCTGACAGATGAATACAATTAACATTACAATTATATTGGTAAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAACGAATAAAT                                                                                  <  8:1117775/101‑1
  CATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  9:797745/101‑1
  CATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  20:797745/101‑1
  CATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  2:1028341/101‑1
  CATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  13:1028341/101‑1
  CATTGTCCGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  14:556220/101‑1
  CATTGTCCGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT                                                                                  <  3:556220/101‑1
   ATTGTCTGAGTGATGCATAAAATGAACATTACAATTATAGTGTTTAACATTATATTTGTTTCTTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             <  3:1019693/101‑1
   ATTGTCTGAGTGATGCATAAAATGAACATTACAATTATAGTGTTTAACATTATATTTGTTTCTTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             <  14:1019693/101‑1
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  18:952375/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  17:14379/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  18:248159/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  6:14379/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             <  22:164039/101‑1
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  22:1007846/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  7:248159/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  7:952375/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  11:1007846/1‑101
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             <  11:164039/101‑1
   ATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A                                                                             >  11:912081/1‑101
                       AATTACAATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  2:538737/1‑101
                       AATTACAATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  13:538737/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  9:665011/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  20:665011/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  20:336614/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  20:1032153/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  9:336614/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  1:190634/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  9:1087302/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  12:190634/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  14:617656/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTT                                                     >  3:617656/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A..TA....CATCGTGTCTGCACTTGC                                                   >  15:706037/1‑101
                       AATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A..TA....CATCGTGTCTGCACTTGC                                                   >  4:706037/1‑101
                             aATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  3:1086263/2‑101
                             aATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  21:551781/2‑101
                             aATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  10:551781/2‑101
                             aATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  14:1086263/2‑101
                             CATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  19:103007/1‑101
                             CATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  8:103007/1‑101
                             CATTACAATTATAGTGGTTAACATTATAGTTAAGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  17:897885/1‑101
                             CATTACAATTATAGTGGTTAACATTATAGTTAAGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAAC                                               >  6:897885/1‑101
                              ATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACA                                              >  13:947677/1‑101
                              ATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACA                                              >  2:947677/1‑101
                              ATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACA                                              >  17:776284/1‑101
                              ATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACA                                              >  6:776284/1‑101
                                 ACAGTTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCA                                           >  10:1107727/1‑101
                                 ACAGTTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCA                                           >  21:1107727/1‑101
                                   tATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  20:672679/2‑101
                                   tATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  9:672679/2‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATAAATACATCGTGTCTGCACTTGCTAACAa                                             >  20:195154/1‑100
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATAAATACATCGTGTCTGCACTTGCTAACAa                                             >  9:195154/1‑100
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  5:292059/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  12:1133144/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  16:292059/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  3:793149/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  12:1009232/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  14:793149/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  3:244709/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  14:244709/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATT                                         >  1:1133144/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTACTAACAGCATT                                         >  10:38164/1‑101
                                   AATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTACTAACAGCATT                                         >  21:38164/1‑101
                                   AATTA.AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTA                                        >  19:208194/1‑101
                                   AATTA.AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTA                                        >  8:208194/1‑101
                                    ATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATAAATACATCGTGTCTGCACTTGCTAACAGC                                            >  14:678807/1‑101
                                    ATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATAAATACATCGTGTCTGCACTTGCTAACAGC                                            >  3:678807/1‑101
                                    ATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTA                                        >  10:345950/1‑101
                                    ATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTA                                        >  1:718375/1‑101
                                    ATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTA                                        >  21:345950/1‑101
                                       ATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCG                                     >  6:481505/1‑101
                                       ATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCG                                     >  16:210896/1‑101
                                       ATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCG                                     >  17:481505/1‑101
                                       ATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCG                                     >  5:210896/1‑101
                                        TAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGA                                    >  8:506492/1‑101
                                        TAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGA                                    >  19:506492/1‑101
                                         AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A..TA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCA                                 >  5:271790/1‑101
                                         AGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....A..TA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCA                                 >  16:271790/1‑101
                                                  CATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGC                          >  14:1229699/1‑101
                                                  CATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGC                          >  3:1229699/1‑101
                                                   ATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAAGAGCCAAATGAATAAAT....AAATA....CATGGTGTCTGCACTTGCTAACAGCATTATCGAGCAACTATGCT                         >  20:94610/1‑101
                                                   ATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCT                         >  7:682085/1‑101
                                                   ATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCT                         >  18:682085/1‑101
                                                   ATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCT                         >  22:45546/1‑101
                                                        AGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA                    >  16:1200685/1‑101
                                                        AGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACA                    >  5:1200685/1‑101
                                                                    AGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCT        >  12:335907/1‑101
                                                                    AGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCT        >  5:295330/1‑101
                                                                    AGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCT        >  16:295330/1‑101
                                                                    AGTCAGCCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCT        >  1:335907/1‑101
                                                                        AGCCATAAGGAGAACAGCCAAATGAATAAATGAATAAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCT        >  8:1032432/1‑101
                                                                        AGCCATAAGGAGAACAGCCAAATGAATAAATGAATAAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCT        >  19:1032432/1‑101
                                                                          CCATAAGGAGAACAGCCAAATGAATAAAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT  >  10:159642/1‑101
                                                                                                                                                                                       
ATCATTGTCTGACAGATGAATACAATTAACATTACAATTATAGTGGTTAACATTATAGTTGTGTCGTTAGTCAGCCATAAGGAGAACAGCCAAATGAATA...................................................................................  <  NC_013198/1998940‑1998841
....................................................................................................AAT....AAATA....CATCGTGTCTGCACTTGCTAACAGCATTATCGAGCAAATATGCTTGACATTACCAGCGGCTGGCATT  <  NC_013198/1998844‑1998770

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG