New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 1914709	85 (0.975)	35 (0.402)	5/266	7.3	intergenic (+79/‑14)	LGG_01872/LGG_01873	melibiose permease II/hypothetical protein
	?	NC_013198	= 1914755	88 (0.895)				coding (33/165 nt)	LGG_01873	hypothetical protein
Continuation Left: 0 Continuation Right:0
Rejected: Position hash score below cutoff.

CGCGGACCCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG..................................................................................................................................................  .  NC_013198/1914557‑1914709 ............................................................................................................................................AGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTTTT  .  NC_013198/1914755‑1914610                                                                                                                                                                                                                                                                                                                 CGCGGACCCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGCTTAATTGTTAGTTACTTGAATTGAGCATGCGGTTACACGCTCACATCATAACGCGCCCCCCGGCGC....AGAAGTCGGAGggaa                                                                                                                                                      >  1:147789/1‑147        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGTTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  2:793523/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGGTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  1:378019/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  1:825475/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  2:909903/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  1:166558/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  1:179778/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  1:649451/151‑1        CCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  2:374292/151‑1        CCAGAGGTATGCGGAATCGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCGAATTGTTAGTTACTTGAATTGTGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCC                                                                                                                                               <  2:761346/151‑1         CAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCT                                                                                                                                              <  2:838062/151‑1          AGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTATTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTC                                                                                                                                             <  1:765639/151‑1          AGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTC                                                                                                                                             <  1:843378/151‑1          AGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTC                                                                                                                                             <  1:753781/151‑1          AGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTC                                                                                                                                             <  2:629232/151‑1                   gGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  2:761962/150‑1                   gGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:128666/150‑1                   CGGAATTGGCCGCGAAAGCTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:351761/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  2:197368/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:984104/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:979747/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:949408/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  2:981880/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:757330/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:155874/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:297482/151‑1                   CGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  1:388788/151‑1                   CGGAATTGGCCGCAAAAAGTGCAGCTGCAAGTCAAAAAAAAAAGAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATG                                                                                                                                   <  2:810837/151‑1                    GGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATG                                                                                                                                   <  2:971332/151‑1                    GGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATG                                                                                                                                   <  1:466345/151‑1                    GGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATGG                                                                                                                                  <  1:72091/151‑1                        TTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGCGGTTAGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATG                                                                                                                                   <  1:114446/151‑1                                         AGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCC                                                                                                             <  1:956949/151‑1                                         AGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG.GACCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCC                                                                                                             <  1:243674/151‑1                                          GCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCC                                                                                                             <  1:693774/151‑1                                          GCTGCAAATCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCC                                                                                                             <  2:150325/151‑1                                                                                                                                                 GTCGGAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTA          >  1:568051/1‑151                                                                                                                                                    GGAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTT       <  2:899299/151‑1                                                                                                                                                     GAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGCTGTGAGCGAGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTT      >  2:701512/1‑151                                                                                                                                                     GAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTT      >  2:594357/1‑151                                                                                                                                                     GAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTT      >  2:452507/1‑151                                                                                                                                                     GAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTT      >  2:117942/1‑151                                                                                                                                                     GAGTGTAAG.GACCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTT     >  2:247903/1‑151                                                                                                                                                       GTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTT    >  1:691895/1‑151                                                                                                                                                       GTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTT    >  2:1042076/1‑151                                                                                                                                                       GTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTA.CAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTTT   >  1:921429/1‑151                                                                                                                                                       GTGTAAG.GACCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTTT   >  2:597462/1‑151                                                                                                                                                         GTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTTTT  >  1:190647/1‑151                                                                                                                                                                                                                                                                                                                 CGCGGACCCAGATGTATGCGGAATTGGCCGCGAAAACTGCAGCTGCAAGTCAAAAAAAAAATAAGCAGGTCTAATTGTTAGTTACTTGAATTGAGCATGCTGTTACACGCTCACATCATAACGCGCTCCCCGGCGC....AGAAGTCGGAGTGTAAG..................................................................................................................................................  .  NC_013198/1914557‑1914709 ............................................................................................................................................AGAAGTCGGAGTGTAAGTGGCCTCAGGCGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGACTTCTGCGCCGGGGAGCGCGTTATGATGTGAGCGTGTAACAGCATGCTCAATTCAAGTAACTAACAATTAGACCTGCTTATTTTTTTT  .  NC_013198/1914755‑1914610 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 25 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG