New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 727464	86 (0.931)	5 (0.054)	4/282	8.3	intergenic (+162/‑522)	LGG_00716/lexA	hypothetical protein/LexA repressor
	?	NC_013198	= 727579	106 (1.079)				intergenic (+277/‑407)	LGG_00716/lexA	hypothetical protein/LexA repressor
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Rejected: Position hash score below cutoff.

ACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGG.....................................................................................................................................................  .  NC_013198/727311‑727464 .................................................................................................................................................CGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  .  NC_013198/727579‑727431                                                                                                                                                                                                                                                                                                                 tataagagacagGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATG                                                                                                                                                          <  2:700967/139‑1 ACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCGGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATG                                                                                                                                                          <  2:23099/151‑1 ACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATG                                                                                                                                                          >  2:412509/1‑151  CGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGG                                                                                                                                                         <  1:306007/151‑1       GGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCtgtctcttata                                                                                                                                                    >  2:1053551/1‑140             GTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGctgtctcttata                                                                                                                                              >  1:701146/1‑139                        CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:523081/151‑1                        CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:967507/151‑1                                                                                                                         GTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCC                                  <  2:162809/151‑1                                                                                                                          TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:1052256/151‑1                                                                                                                           GCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCC                                <  1:278922/151‑1                                                                                                                                                        GGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCc   >  2:288819/1‑150                                                                                                                                                        GGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCA   >  2:1062322/1‑151                                                                                                                                                        GGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCA   >  2:486922/1‑151                                                                                                                                                         GGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  <  1:232150/151‑1                                                                                                                                                         GGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  <  1:352132/151‑1                                                                                                                                                                                                                                                                                                                 ACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGG.....................................................................................................................................................  .  NC_013198/727311‑727464 .................................................................................................................................................CGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  .  NC_013198/727579‑727431 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG