New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	1058951 =	66 (0.752)	30 (0.342)	13/296	2.5	coding (53/183 nt)	LGG_01046	hypothetical protein
	?	NC_013198	= 2898115	109 (1.226)				coding (225/237 nt)	LGG_02835	hypothetical protein
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CTTCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA......................................................................................................  .  NC_013198/1059101‑1058951 .....................................................................................................................................................GAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGC  .  NC_013198/2898115‑2898014                                                                                                                                                                                                                                                               CTTCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA                                                                                                        >  1:1117231/1‑151                                           cgcttagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTT                                                              >  1:1130243/12‑151                                              ttagggatCGGAGTTTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGG                                                           <  2:516794/143‑1                                               aAGAGACAGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGC                                                          <  2:364264/150‑1                                                     tCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGcaatg                                                    <  1:998876/150‑6                                                     tCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGcaatg                                                    <  1:706795/150‑6                                                     tCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGcaatg                                                    <  1:48539/150‑6                                                        gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCctgtctctt                                                 >  1:364255/6‑142                                                        gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:745380/6‑151                                                        gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:161725/6‑151                                                        gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  2:1104004/6‑151                                                        gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  2:197518/6‑151                                                        gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  2:191255/6‑151                                                            gTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGC                                             >  1:411250/2‑151                                                            gTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGC                                             >  2:914191/2‑151                                                                  GGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGT                                       >  2:827203/1‑151                                                                  GGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGT                                       >  2:1183728/1‑151                                                                   GCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTC                                      <  1:197506/151‑1                                                                    CCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGaca                                     >  1:172525/1‑148                                                                                  GCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTC                       >  2:963039/1‑151                                                                                  GCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTC                       <  2:33104/151‑1                                                                                  GCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTC                       >  1:93383/1‑151                                                                                       ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAT                  >  1:998482/4‑151                                                                                        gcTTGGCCATTGCGCCCAAGGTCCTTACGCTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  2:133343/149‑1                                                                                        gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGGTCCCTGCGCTGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  2:493755/149‑1                                                                                             GCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAG            >  2:268726/1‑151                                                                                                ATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTT         <  1:963353/151‑1                                                                                                ATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTT         <  2:941904/151‑1                                                                                                     GACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGG    <  1:191244/151‑1                                                                                                      ACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGG   >  2:108802/1‑151                                                                                                       CCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGC  <  1:914507/151‑1                                                                                                                                                                                                                                                               CTTCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA......................................................................................................  .  NC_013198/1059101‑1058951 .....................................................................................................................................................GAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGC  .  NC_013198/2898115‑2898014 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG