New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	2122110 =	71 (0.843)	42 (0.499)	12/284	2.5	intergenic (‑168/+326)	efp/yrjD	protein elongation factor P/hypothetical protein
	?	NC_013198	2122257 =	72 (0.810)				intergenic (‑315/+179)	efp/yrjD	protein elongation factor P/hypothetical protein
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GCTGGCGGAGCGGTGGCGGGCTCAGTGGTGAAATTGGTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGC...................................................................................................................................................  .  NC_013198/2122265‑2122110 ....................................................................................................................................................GCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACCCTAGCGCAGATACGCTCGCTAGGCCCGA  .  NC_013198/2122257‑2122403                                                                                                                                                                                                                                                                                                                 GCTGGCGGAGCGGTGGCGGGCTCAGTGGTGAAATTGGTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCC                                                                                                                                                          <  1:437645/151‑1 GCTGGCGGAGCGGTGGCGGGCTCAGTGGTGAAATTGGTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCC                                                                                                                                                          <  2:298065/151‑1      gGGAGCGGTGGCGGGCTCAGTGGTGAAATTGGTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGC                                                                                                                                                     <  2:1056454/150‑1                              GAAATTGGTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACGGCTCCGCCAGCTCTTGCTTTCTATCC                                                                                                                             >  1:491192/1‑151                                     GTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACc                                                                                                                      >  2:632751/1‑150                                     GTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCCCCGCCAGCTCTTGCTTTCTATCCCTGCACT                                                                                                                      >  2:481064/1‑151                                                 GTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGA                                                                                                          >  2:489891/1‑151                                                             gcaTTAGACCAAGGCCGGGCGGCGAAACCGCGGTCTTTACGGGTTCGAAGTCGCGCCCACCCCTCTAGCTCGCCGATAAACAGCCCGAGCCACCGCGCCGCCCGACCTTCCTTTCTATCCCTGCACCCCAACAACCACACTCAACGCATCC                                                                                              >  2:1034758/4‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACCACGAGACTCAACGTATCC                                                                                              >  2:169528/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCCACGTATCC                                                                                              >  2:5720/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  1:952565/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  1:707931/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  1:550716/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  2:634769/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  2:83566/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  2:1068838/1‑151                                                             GCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGGCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCC                                                                                              >  1:696104/1‑151                                                              CTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCT                                                                                             >  2:1224757/1‑151                                                                   GACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTT                                                                                        >  1:481434/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCCGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCCCTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  2:124368/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGCCCCAACGcacccctcgctg                                                                                       >  2:116319/1‑139                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCCACGTATCCTTCGTTG                                                                                       >  2:1202217/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  2:41304/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  2:632845/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  2:755030/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  2:893607/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:958953/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:837744/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:779478/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:777775/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:102128/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:1097900/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:1171301/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:1226645/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:147734/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:419703/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTG                                                                                       >  1:217211/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGCATCCTTCGTTG                                                                                       >  2:974113/1‑151                                                                    ACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGAATCCTTCGTTG                                                                                       >  2:642134/1‑151                                                                     CCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGA                                                                                      >  2:196882/1‑151                                                                                                       GTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATC                                                    <  2:779296/151‑1                                                                                                              GTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAA                                             >  1:343249/1‑151                                                                                                                             CTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACC                              <  2:419714/151‑1                                                                                                                             CTAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACC                              <  2:777593/151‑1                                                                                                                              TAGCTGCGCGGTCGCCAGCCCCAGCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACCC                             <  1:634901/151‑1                                                                                                                                                      CCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACCCTAGCGCAGATACGCTCGCTAGGCC     <  1:552721/151‑1                                                                                                                                                      CCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACCCTAGCGCAGATACGCTCGCTAGGCC     <  1:1134068/151‑1                                                                                                                                                      CCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACCCTAGCGCAGATACGCTCGCTAGGCC     >  1:718307/1‑151                                                                                                                                                         CCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAACAAGCCGACCCTAGCGCAGATACGTTCGCTAGcaccga  >  2:409013/1‑145                                                                                                                                                                                                                                                                                                                 GCTGGCGGAGCGGTGGCGGGCTCAGTGGTGAAATTGGTCTTAAGCGGAGTGGGCTTCTCCGCTTTAGACCAAGGCCGAGCTTCGAAACCGCGGTCTTTGCGGGTTCGAAGTCGCGCCCACCACTCTAGCTGCGCGGTCGCCAGCCCCAGCCACCGC...................................................................................................................................................  .  NC_013198/2122265‑2122110 ....................................................................................................................................................GCCACCGCTCCGCCAGCTCTTGCTTTCTATCCCTGCACTCAAACAACGAGACTCAACGTATCCTTCGTTGAAGAGTACGTTCCAATTAATCCGATAAGTATAATCTGTCCAACCAAAAAAGCCGACCCTAGCGCAGATACGCTCGCTAGGCCCGA  .  NC_013198/2122257‑2122403 Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG