New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	2203807 =	71 (0.868)	16 (0.196)	8/276	3.3	intergenic (+236/+371)	LGG_02133/LGG_02134	hypothetical protein/MarR family transcriptional regulator
	?	NC_013198	2203951 =	67 (0.753)				intergenic (+380/+227)	LGG_02133/LGG_02134	hypothetical protein/MarR family transcriptional regulator
Continuation Left: 0 Continuation Right:0
Rejected: Position hash score below cutoff.

AGGCGGAGCAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCC......................................................................................................................................................  .  NC_013198/2203966‑2203807 ....................................................................................................................................................CCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAGTTACT  .  NC_013198/2203951‑2204100                                                                                                                                                                                                                                                                                                                        AGGCGGAGCAATCGTGGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCC                                                                                                                                                                 <  2:1213427/151‑1 AGGCGGAGCAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCC                                                                                                                                                                 <  2:1005894/151‑1 AGGCGGAGCAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCC                                                                                                                                                                 >  1:180274/1‑151  GGCGGAGCAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCC                                                                                                                                                                >  2:98897/1‑151      GAGCAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCT                                                                                                                                                            >  1:724256/1‑151         acatcgtggatCAGAGGGGGCTCATTCGTGGAATCAACGCATCGACCGGTTTTTGTCGCGGGGGTATGTTGGTAGGGGTCTTGGAGACTGCTGGGCTTGCAGGCTTCATGCGCCGTCTCCGCTCTAGTTTCGCGTCGCCACCCCATCTGGC                                                                                                                                                         <  2:612344/140‑1         CAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGC                                                                                                                                                         <  1:349103/151‑1                          GGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGGTCCAAGCGCCGTCTCCGCACTAGCTTCGCGTAGCCACCCCATCTGGCCTACGATTGCTCCGCCT                                                                                                                                        >  1:151229/1‑151                          GGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCT                                                                                                                                        >  2:151161/1‑151                          GGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCCCCCCCT                                                                                                                                        >  2:1007714/1‑151                          GGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCGGAGATTGCTCCGCCT                                                                                                                                        >  2:56227/1‑151                          GGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGAATTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCCCCGCTCTAGCTTCTCGTCGCCACCCCATATGGACTACGATTGCTCCGCCT                                                                                                                                        >  1:50401/1‑151                           GGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTT                                                                                                                                       >  1:19305/1‑151                           GGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGGATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGACGTCTCAGCATTAGATTCGCGTCGTCCCCCCATCTGGCCTACGATTGCTCCGCCcc                                                                                                                                       >  2:1037386/1‑149                                 GCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCCCTAGCTTCGCGTCGCCCCCCCATCTGGCCCACGACTGCTCCGCCTTGGGACT                                                                                                                                 >  2:909958/1‑151                                                                     GGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAA                                                                                             >  2:286161/1‑151                                                                                                  GCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTA                                                                >  1:211933/1‑151                                                                                                                     atCGCCGTCTCCGCACTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAACAGCAAACCATTTCTCGTTTTTAGCGAGAAACGATTCGCatt                                             >  2:700928/3‑148                                                                                                                     AGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGACACGAATCGCTTT                                             >  2:905494/1‑151                                                                                                                                 GCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCT                                 >  1:1079168/1‑151                                                                                                                                 GCTCTAGCTTCGCGTCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCT                                 >  1:888684/1‑151                                                                                                                                               TCGCCACCCCATCTGGCCTCCGATTGCTCCGCCTTGGCACTAAGGTCCTTCCAGTCTATTTACACTCCTGTAAGGCATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGAATCGCTTTTATCTTGACGCTGTGTATTGTTGCTC                   >  2:185896/1‑151                                                                                                                                               TCGCCACCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTC                   >  1:299174/1‑151                                                                                                                                                        CATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTT          >  2:609528/1‑151                                                                                                                                                        CATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTT          >  2:958868/1‑151                                                                                                                                                         ATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTA         <  1:887582/151‑1                                                                                                                                                           CTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAG       <  2:863565/151‑1                                                                                                                                                           CTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAG       <  2:864797/151‑1                                                                                                                                                             GGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAGTT     >  1:411820/1‑151                                                                                                                                                             GGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAGTT     >  1:1043188/1‑151                                                                                                                                                              GCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAGTTA    >  2:172341/1‑151                                                                                                                                                                CTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAGTTACT  >  2:1236480/1‑151                                                                                                                                                                                                                                                                                                                        AGGCGGAGCAATCGTAGGCCAGATGGGGCTCAGCCGTGGAAACAACACAGCGACCGGTTTTTGTCGCGGGGGTATGTTGTTAGGCGACTTGGAGACTGCCGGGCTTGCAGGCTCCAAGCGCCGTCTCCGCTCTAGCTTCGCGTCGCCACCCCATCTGGCC......................................................................................................................................................  .  NC_013198/2203966‑2203807 ....................................................................................................................................................CCCCATCTGGCCTACGATTGCTCCGCCTTGGCACTAAAGTCCTTAAAGTCTATTTACACTAATGTAAGGAATCTAAAAAGCAAACCATTTCTCGATTTTAGCGAGAAACGATTCGCTTTTATTTTGAAGCTGTGAATTGTTGCTCAGCCTCTTTAAGTTACT  .  NC_013198/2203951‑2204100 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 12 ≤  ATCG  < 29 ≤  ATCG  < 40 ≤  ATCG