New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 2688793	139 (1.651)	13 (0.154)	7/284	3.6	intergenic (+185/‑315)	LGG_02628/uvrA	MarR family transcriptional regulator/excinuclease ABC subunit A
	?	NC_013198	= 2688926	135 (1.518)				intergenic (+318/‑182)	LGG_02628/uvrA	MarR family transcriptional regulator/excinuclease ABC subunit A
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Rejected: Position hash score below cutoff.

CGCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGC.....................................................................................................................................................  .  NC_013198/2688638‑2688793 ....................................................................................................................................................GCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGCCAG  .  NC_013198/2688926‑2688778                                                                                                                                                                                                                                                                                                                   CGCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCG                                                                                                                                                            >  1:314607/1‑151 CGCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCG                                                                                                                                                            >  2:116101/1‑151  GCCTTACGCATCTCCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGG                                                                                                                                                           <  2:729426/151‑1  GCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGG                                                                                                                                                           >  1:30069/1‑151  GCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGG                                                                                                                                                           >  1:340449/1‑151  GCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGG                                                                                                                                                           >  2:557018/1‑151                              TGGCATATTCCGATAAATTTGGCGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCGGTGTGCCCCAAGTTACTTTGGTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAG                                                                                                                               <  2:1242317/151‑1                              TGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAG                                                                                                                               <  1:793810/151‑1                              TGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAG                                                                                                                               <  1:99436/151‑1                               GGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGT                                                                                                                              <  2:900762/151‑1                               GGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGT                                                                                                                              <  1:1178451/151‑1                                                                                        CAGCTGTGTGCGCGAAGTTACTTTGTTGGTATGTAATAGATAGAGTACAAGAGCTGGGGGGGTGGTGGCAGGATGGCGACGGAGCAGCTAGAGTGGTGGGCTGGACTTTGAGCCCGCAAAGCGGATGCGCGGGTTCAAAGCGCGGCCTTGG                                                                     <  2:890128/151‑1                                                                                         AGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGT                                                                    <  1:1220681/151‑1                                                                                         AGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGT                                                                    <  1:381959/151‑1                                                                                         AGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGT                                                                    <  1:682914/151‑1                                                                                         AGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGT                                                                    <  1:70083/151‑1                                                                                                TGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGC                                                             <  1:1031416/151‑1                                                                                                              TTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTC                                               <  2:918359/151‑1                                                                                                                               ATAGAAAACAAGAGCTGGCGGAGCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTC                              <  1:975591/151‑1                                                                                                                                                        GTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGC     >  1:881172/1‑151                                                                                                                                                        GTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGC     >  2:314616/1‑151                                                                                                                                                        GTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGC     <  1:114001/151‑1                                                                                                                                                         gGGCGGGAGGGCGACCGCGCAGCTAGGGTGGTGGGCACGACTTTGACCCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGCC    <  2:550040/150‑1                                                                                                                                                         TGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGCC    <  1:1064703/151‑1                                                                                                                                                           GCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGCCAG  >  1:484184/1‑151                                                                                                                                                                                                                                                                                                                   CGCCTTACGCATCACCGCGTAAGGCTTTTTGGCATATTCCGATAAATTTGACGCCATGCTTACTGGCGAATGACAACACTGCGAACCCAGCTGTGTGCCCCAAGTTACTTTGTTCGTATGTAAAAAATAGAAAACAAGAGCTGGCGGAGCGGTGGC.....................................................................................................................................................  .  NC_013198/2688638‑2688793 ....................................................................................................................................................GCGGTGGCAGGATGGCGACCGCGCAGCTAGAGTGGTGGGCACGACTTTGAACCCGCAAAGTGCATGCGCGGTTTCAAAGCTCGGCCTTGGTCTAAAGCGGAGAAGCCCACTCCGCTTAAGACCAATTTCACCACTGAGCCCGCCACCGCTCCGCCAG  .  NC_013198/2688926‑2688778 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 23 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG