New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	= 727464	77 (0.921)	46 (0.550)	11/282	2.7	intergenic (+162/‑522)	LGG_00716/lexA	hypothetical protein/LexA repressor
	?	NC_013198	= 727579	NA (NA)				intergenic (+277/‑407)	LGG_00716/lexA	hypothetical protein/LexA repressor
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ATGAAACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGG.....................................................................................................................................................  .  NC_013198/727306‑727464 ......................................................................................................................................................CGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  .  NC_013198/727579‑727431                                                                                                                                                                                                                                                                                                                      ATGAAACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTC                                                                                                                                                               <  2:839126/151‑1      ACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATG                                                                                                                                                          <  1:1161026/151‑1       CGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGG                                                                                                                                                         <  1:514884/151‑1                            ACAGCTTCAAAATAGAAGCGTACTATTTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAG                                                                                                                                    <  1:394093/151‑1                             catCTTCAAAATAGAAGCTTTCTATTTCAGTTTTTTACAAGAAATAGTACGCTTTTTTGCTTTGCCGTATTAGGATAAATGGGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:648187/148‑1                             catCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:203173/148‑1                             CAGCTTGAAGATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:769367/151‑1                             CAGCTTCAAAATAGAAGCGTTCTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:254569/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:3706/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:233965/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:1249057/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:544221/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:1175691/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:561728/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:42286/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:386382/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:944913/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:30613/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:158321/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  2:918950/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:262067/151‑1                             CAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGC                                                                                                                                   <  1:270468/151‑1                             CAGCGTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGATATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGATCTGTTACGATTCCAGTGCCAAAGCGTAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGtgc                                                                                                                                   <  2:1110244/151‑4                                   CAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGAC                                                                                                                             <  2:608651/151‑1                                        TAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGC                                                                                                                        <  2:1121075/151‑1                                         AGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCT                                                                                                                       <  1:123730/151‑1                                         AGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCT                                                                                                                       <  1:583437/151‑1                                                                           GTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCC                                                                                     >  2:50759/1‑151                                                                               GCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTNNNNNNNNNANTGCCAAANNNNNNNNNNCGNAGGTCGNATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAAC                                                                                 <  1:407437/151‑1                                                                               GCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAAC                                                                                 <  2:832778/151‑1                                                                                       GCTTGTCGGTATTAGTATAAATGAGCTTTAACGACTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGTGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAG                                                                         <  2:184036/151‑1                                                                                                                             AGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGC                                   <  1:365218/151‑1                                                                                                                              GTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCC                                  <  1:1202099/151‑1                                                                                                                              GTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCC                                  <  1:304823/151‑1                                                                                                                              GTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCC                                  <  1:1208823/151‑1                                                                                                                               TGCCAAAGCGTAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  2:879603/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCn                                 <  1:833460/151‑2                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  2:898969/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  2:871925/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  2:407898/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  2:271098/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  2:1095505/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:924714/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:1205321/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:708806/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:50759/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:451982/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:274354/151‑1                                                                                                                               TGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCC                                 <  1:145678/151‑1                                                                                                                                                        GGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTT        >  1:139980/1‑151                                                                                                                                                             GGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCA   >  2:985940/1‑151                                                                                                                                                             GGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGAACTACGACTGCTCCGCTTTGGCc   >  2:710895/1‑150                                                                                                                                                              GGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  <  2:1016784/151‑1                                                                                                                                                                                                                                                                                                                      ATGAAACGAGAGGCTGAGTCATAATTCACAGCTTCAAAATAGAAGCGTACTATTTCAGGTTTTTACAAGAAATAGTACGCTTTTTTGCTTTTCCGTATTAGTATAAATGAGCTTTAACGATTCCAGTGCCAAAGCGGAGCAGTCGTAGGTCGGATGGGG.....................................................................................................................................................  .  NC_013198/727306‑727464 ......................................................................................................................................................CGGATGGGGTGGCGACGCGAAGCTAGAGCGGAGACGGCGCTTGGAGCCTGCAAGACCGGCAGTCTCCAAGTCGCCTAACAACATCAGCGACAAAGCCCGGTCGCTGTGTTGTTCCACGGCTGAGCCCCATCCGACCTACGACTGCTCCGCTTTGGCAC  .  NC_013198/727579‑727431 Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG