New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	1058951 =	78 (1.000)	12 (0.154)	8/292	4.5	coding (53/183 nt)	LGG_01046	hypothetical protein
	?	NC_013198	1872897 =	56 (0.699)				intergenic (‑27/+113)	LGG_01842/LGG_01843	5‑methylcytosine‑specific restriction enzyme MRR/hypothetical protein
Continuation Left: 0 Continuation Right:0
Rejected: Position hash score below cutoff.

TCGCCATAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGT  .  NC_013198/1872755‑1873047                                                                                                                                               |                                                                                                                                                       tCGCCATAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGagcc                                                                                                                                                <  2:593416/151‑1  cGCCATAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGagcca                                                                                                                                               >  2:116506/1‑151  cGCCATAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGagcca                                                                                                                                               >  1:565580/1‑151    ccATAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGagccagc                                                                                                                                             >  1:197424/1‑151      aTAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGccc                                                                                                                                           <  1:441277/151‑1                gtataagagacagaaaTAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAAc                                                                                                                                 <  1:648364/138‑1                        gggCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCAt                                                                                                                         >  2:410859/1‑151                        gggCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCAt                                                                                                                         <  1:782647/151‑1                        gggCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCAt                                                                                                                         >  2:558354/1‑151                        gggCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCAt                                                                                                                         >  1:47090/1‑151                         ggCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATa                                                                                                                        >  1:222811/1‑151                           cAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAg                                                                                                                      <  1:790030/151‑1                             aaaTAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAAcctgtctcttatac                                                                                                                    >  2:648158/1‑139                             aaaTAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTg                                                                                                                    >  2:163957/1‑151                                tAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGcc                                                                                                                 <  2:124382/151‑1                                     cGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTggg                                                                                                            <  1:118902/151‑1                                       gCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCg                                                                                                          <  1:14818/151‑1                                       gCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCg                                                                                                          >  1:204556/1‑151                                            aaaaaCTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGtgatg                                                                                                     <  2:436072/151‑1                                            aaaaaCTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGtgatg                                                                                                     <  1:5139/151‑1                                              aaaCTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGAc                                                                                                   <  1:678104/151‑1                                                   gTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGc                                                                                              <  1:35400/151‑1                                                   gTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGc                                                                                              >  2:570111/1‑151                                                      aaTAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGAccaaagccc                                                                                           <  2:110682/151‑8                                                            ggCCAATACAAACAACCCCCACAACAACTGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCAt                                                                                     >  2:610883/1‑151                                                             gCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCAtt                                                                                    <  2:570960/151‑1                                                                aaTACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTgcg                                                                                 >  1:704367/1‑151                                                                      aacaacCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAg                                                                           >  1:756606/1‑151                                                                       acaacCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAgg                                                                          <  2:634692/151‑1                                                                       acaacCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAgg                                                                          <  2:780303/151‑1                                                                             cccACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTa                                                                    <  1:558485/151‑1                                                                               cacaACAAATGGTAGGTCGTTATAAGTAAAATTCTCATGCTTCTAACCCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAtg                                                                  <  1:281011/151‑1                                                                               cacaACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAtg                                                                  <  1:775891/151‑1                                                                               cacaACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAtg                                                                  <  1:133905/151‑1                                                                                 caacaaATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAtgtg                                                                >  1:580564/1‑151                                                                                   acaaATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTTTAAACCCTTCTAGTTAAGTAAGCGTGAGCCAGCCCGGTTAGAAACAGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCACGGACCTTATGTGCa                                                              >  1:731546/1‑151                                                                                       aTGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGtt                                                          <  1:331695/151‑1                                                                                             ggCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTggg                                                    <  2:207297/151‑1                                                                                              gCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGc                                                   <  2:267468/151‑1                                                                                              gCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGc                                                   <  2:413057/151‑1                                                                                                 tttttAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTgg                                                >  1:149549/1‑151                                                                                                        ggaaaaTTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCCTATGCGCAAGCTTCTGGGCGGGCGAAcgc                                         >  2:69903/3‑151                                                                                                            aaTTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTa                                     <  2:580357/151‑1                                                                                                                ctcATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAg                                 <  2:11130/151‑1                                                                                                                ctcATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAg                                 <  1:785423/151‑1                                                                                                                ctcATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAg                                 <  2:850193/151‑1                                                                                                                  taTGCTTCTAAACCCTTCTAGTTAAGTGGGCGTGATCCTGCCCGGTTAGAAACCGGAGCATAAGGGGCCTTGGGCGTGATGACCGGGCTTTGGTCATGGCGCCCAAGGTCCTTATGTGCAGGTTGCTGGGCTGGCGAACGCGTTATGAGCg                               <  2:856367/150‑1                                                                                                                      cTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGaa                           >  2:729936/1‑151                                                                                                                      cTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGGGaa                           >  2:717816/1‑151                                                                                                                       ttCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAAc                          <  1:47240/151‑1                                                                                                                              cccTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGgcgcg                   >  2:352416/1‑151                                                                                                                                cTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCt                 >  1:94839/1‑151                                                                                                                                     aGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAggg            <  1:815434/151‑1                                                                                                                                     aGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAggg            >  1:460088/1‑151                                                                                                                                     aGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAggg            >  1:227734/1‑151                                                                                                                                            tgggcgtgagcCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAg     <  2:764958/148‑1                                                                                                                                              agcgtgagcCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGCTTCTGGGCTGGCGAACGCGTTATGCGCGTGAACCGGCGCGCTTAGGGGTCGGAgtg   >  2:360570/1‑151                                                                                                                                               gcgtgagcCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAgtgt  >  1:748421/1‑151                                                                                                                                               |                                                                                                                                                       TCGCCATAAGGTCGCAACTGCCGGGGCAAAATAGTGCGGCCCCAAAAACTGTAAATAAGGGCCAATACAAACAACCCCCACAACAAATGGTAGGCCTTTTTAAGTAAAATTCTCATGCTTCTAAACCCTTCTAGTTAAGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGCTGGCGAACGCGTTATGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGT  .  NC_013198/1872755‑1873047 Base quality scores:  ATCG  < 3 ≤  ATCG  < 13 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG