breseq  version 0.17d  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 385,772 Δ3 bp intergenic (‑604/+471) is10/LGG_00377 transposase IS5 family protein/hypothetical protein
RA 615,483 T→C S422P (CTG→CCG)  treB PTS system beta‑glucoside‑specific transporter subunit IIABC
RA 751,632 2 bp→GC intergenic (+65/‑193) napA/gph Na/H antiporter/haloacid dehalogenase‑like family hydrolase
RA 985,365 A→G I904I (ATT→ATC pacL cation‑transporting ATPase
MC JC 1,038,046 Δ860 bp [LGG_01023]–is36 [LGG_01023], is35, is36
RA 1,074,976 G→A E180K (GAA→AAA)  galU UTP‑glucose‑1‑phosphate uridylyltransferase
RA 1,873,058 A→G P249P (CCT→CCC LGG_01843 hypothetical protein
MC JC 1,877,309 Δ1,586 bp LGG_01848 LGG_01848
RA 1,883,242 C→A intergenic (‑292/+93) ABC‑SBP/LGG_01854 ABC transporter substrate‑binding protein/hypothetical protein
RA 2,158,707 C→T D24D (GAC→GAT LGG_02095 type II restriction enzyme methylase subunit
RA 2,158,710 G→A V25V (GTG→GTA LGG_02095 type II restriction enzyme methylase subunit
RA 2,158,719 C→T G28G (GGC→GGT LGG_02095 type II restriction enzyme methylase subunit
RA 2,160,010 G→A A459T (GCG→ACG)  LGG_02095 type II restriction enzyme methylase subunit
RA 2,163,622 T→C T636A (ACG→GCG)  LGG_02097 type II restriction enzyme methyltransferase
RA 2,164,868 T→C V220V (GTA→GTG LGG_02097 type II restriction enzyme methyltransferase
RA 2,164,871 A→G D219D (GAT→GAC LGG_02097 type II restriction enzyme methyltransferase
RA 2,353,548 G→A S767F (TCC→TTC)  LGG_02282 hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_013198 392237–393747 474456–472946 79200–82220 40 [39] [39] 41 is11–[is26] 84 genes
is11, LGG_00384, LGG_00385, LGG_00386, slyA, LGG_00388, LGG_00389, aroE, LGG_00391, LGG_00392, manR, LGG_00394, frwA1, frwB1, frwC1, tal, rpe, ulaA, ulaB, pts, is12, ulaC, tktN, tktC, scrK, lacR, frwA2, frwB2, frwC2, is13, fba, gatY, pts, pts, manZ, tal, LGG_00419, yhfZ, LGG_00421, LGG_00422, LGG_00423, php, yhfS, yhfX, YHFW, ilvH, LGG_00429, cbiO, cbiQ, LGG_00432, menC, nagZ, is14, tnpR, LGG_00437, LGG_00438, LGG_00439, LGG_00440, srtC1, spaA, spaB, spaC, is15, LGG_00446, LGG_00447, LGG_00448, LGG_00449, ybjD, is16, is17, is18, is19, LGG_00455, pacL, is20, is21, napA, is22, is23, is24, eriC, is25, LGG_00465, [is26]
* * ÷ NC_013198 1873063–1873847 1873905 59–843 40 [39] [39] 40 [LGG_01843]–[LGG_01844] [LGG_01843], [LGG_01844]
* * ÷ NC_013198 2000909–2002399 2002399 1–1491 40 [39] [38] 40 [is48]–is49 [is48], is49
* * ÷ NC_013198 2574300 2574565 266 40 [34] [39] 40 [LGG_02511]–[LGG_02512] [LGG_02511], [LGG_02512]