mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| read file | reads | bases | longest | |
|---|---|---|---|---|
| errors | 01_1_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_10 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_11 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_12 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_1_13 | 414,804 | 41,895,204 | 101 bases |
| errors | 01_3_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_10 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_11 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_12 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 01_3_13 | 414,804 | 41,895,204 | 101 bases |
| total | 33,329,608 | 3,366,290,408 | 101 bases |
| seq id | length | coverage | nbinom mean | nbinom size | description | ||
|---|---|---|---|---|---|---|---|
| coverage | distribution | NC_013198 | 3,010,111 | 785.6 | 763.3 | 13.6 | Lactobacillus rhamnosus GG, complete genome. |
| total | 3,010,111 |
| reference sequence | read start probability |
|---|---|
| NC_013198 | 0.26871 |
| step | start | end | elapsed |
|---|---|---|---|
| Read and reference sequence file input | 07:31:00 16 Aug 2012 | 07:45:16 16 Aug 2012 | 14 minutes 16 seconds |
| Read alignment to reference genome | 07:45:16 16 Aug 2012 | 13:38:55 16 Aug 2012 | 5 hours 53 minutes 39 seconds |
| Preprocessing alignments for candidate junction identification | 13:38:55 16 Aug 2012 | 13:57:39 16 Aug 2012 | 18 minutes 44 seconds |
| Preliminary analysis of coverage distribution | 13:57:39 16 Aug 2012 | 14:25:18 16 Aug 2012 | 27 minutes 39 seconds |
| Identifying candidate junctions | 14:25:18 16 Aug 2012 | 14:27:26 16 Aug 2012 | 2 minutes 8 seconds |
| Candidate junction alignment | 14:27:26 16 Aug 2012 | 16:27:02 16 Aug 2012 | 1 hour 59 minutes 36 seconds |
| Resolving alignments with candidate junctions | 16:27:02 16 Aug 2012 | 16:50:06 16 Aug 2012 | 23 minutes 4 seconds |
| Creating BAM files | 16:50:06 16 Aug 2012 | 17:11:53 16 Aug 2012 | 21 minutes 47 seconds |
| Tabulating error counts | 17:11:53 16 Aug 2012 | 17:22:25 16 Aug 2012 | 10 minutes 32 seconds |
| Re-calibrating base error rates | 17:22:25 16 Aug 2012 | 17:22:54 16 Aug 2012 | 29 seconds |
| Read alignment mutations | 17:22:54 16 Aug 2012 | 18:37:55 16 Aug 2012 | 1 hour 15 minutes 1 second |
| Output | 18:37:55 16 Aug 2012 | 18:41:13 16 Aug 2012 | 3 minutes 18 seconds |
| Total | 11 hours 10 minutes 13 seconds | ||
