Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_013198	1,877,348	G→A	intergenic (‑377/‑74)	LGG_01847/LGG_01848	membrane protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_013198	1,877,348	0	G→A	100.0%	30.8	8	intergenic (‑377/‑74)	LGG_01847/LGG_01848	membrane protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (2/6):  ref base (0/0):  total (2/6)

TTAAGGCCACTTACACTCCGGTTTCTAAGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCTGACAGAA.AGGGAGCGAATCCCTTCGTGCTACAATGTTAATTGCAAGAAAAACACGATAGCAGTAGGAGGAATTCGCTCTTGTCACCTATAGTACAACAAAT  >  NC_013198/1877259‑1877444                                                                                          |                                                                                                  ttAAGGCCACTTACACTCCGGTTTCTAAGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGa                                                                                       <  10:193048/101‑1 ttAAGGCCACTTACACTCCGGTTTCTAAGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGa                                                                                       <  21:193048/101‑1      gCCGCTTACACTCCGGTCCCTAAGCGCGCCGGTTCGCGCTCAC..CATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGAATCCCtt                                                                                <  19:986481/101‑1      gCCGCTTACACTCCGGTCCCTAAGCGCGCCGGTTCGCGCTCAC..CATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGAATCCCtt                                                                                <  8:986481/101‑1                       ttCTAAGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGAATCCCTTCGTGCTAGAATGTTa                                                                 >  12:291985/1‑101                       ttCTAAGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGAATCCCTTCGTGCTAGAATGTTa                                                                 >  1:291985/1‑101                            aGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGAATCCCTTCGTGCTAGAATGTTAATTGc                                                            <  11:966870/101‑1                            aGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCAAACAAAA.AGGGAGCGAATCCCTTCGTGCTAGAATGTTAATTGc                                                            <  22:966870/101‑1                                                                              tCTGAGAAGAAAGAA.GTGGAGCGAACACCTTCTTGCTAGAATGTTAATTTCAAGAAAAACACGATAGCAGTAGGGGGAATTCGCTCTTGTCACCTATAGTa          <  14:1198597/101‑1                                                                              tCTGAGAAGAAAGAA.GTGGAGCGAACACCTTCTTGCTAGAATGTTAATTTCAAGAAAAACACGATAGCAGTAGGGGGAATTCGCTCTTGTCACCTATAGTa          <  3:1198597/101‑1                                                                                       aCAGAAGAAGGAGCGAATCCGTTCGTGTTAGATTGTTATTTGCAAGAAAAACGCCAGAGCAGTAGGATGAATTCTCTCTTGTCACCTATAGTACAACAAAt  <  17:1094483/101‑1                                                                                       aCAGAAGAAGGAGCGAATCCGTTCGTGTTAGATTGTTATTTGCAAGAAAAACGCCAGAGCAGTAGGATGAATTCTCTCTTGTCACCTATAGTACAACAAAt  <  6:1094483/101‑1                                                                                          |                                                                                                  TTAAGGCCACTTACACTCCGGTTTCTAAGCGCGCCGGTTCGCGCTTAGTACATGGCGTAAAGTTTAAGTGGGTGATATCTGAGCTGACAGAA.AGGGAGCGAATCCCTTCGTGCTACAATGTTAATTGCAAGAAAAACACGATAGCAGTAGGAGGAATTCGCTCTTGTCACCTATAGTACAACAAAT  >  NC_013198/1877259‑1877444 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG