mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.18
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| read file | reads | bases | longest | |
|---|---|---|---|---|
| errors | 06_1_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_1_10 | 1,213,883 | 122,602,183 | 101 bases |
| errors | 06_3_00 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_01 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_02 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_03 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_04 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_05 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_06 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_07 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_08 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_09 | 1,250,000 | 126,250,000 | 101 bases |
| errors | 06_3_10 | 1,213,883 | 122,602,183 | 101 bases |
| total | 27,427,766 | 2,770,204,366 | 101 bases |
| seq id | length | coverage | nbinom mean | nbinom size | description | ||
|---|---|---|---|---|---|---|---|
| coverage | distribution | NC_013198 | 3,010,111 | 588.9 | 551.8 | 13.8 | Lactobacillus rhamnosus GG, complete genome. |
| total | 3,010,111 |
| reference sequence | read start probability |
|---|---|
| NC_013198 | 0.42686 |
| step | start | end | elapsed |
|---|---|---|---|
| Read and reference sequence file input | 08:06:59 19 Aug 2012 | 08:17:52 19 Aug 2012 | 10 minutes 53 seconds |
| Read alignment to reference genome | 08:17:52 19 Aug 2012 | 13:04:40 19 Aug 2012 | 4 hours 46 minutes 48 seconds |
| Preprocessing alignments for candidate junction identification | 13:04:40 19 Aug 2012 | 13:19:12 19 Aug 2012 | 14 minutes 32 seconds |
| Preliminary analysis of coverage distribution | 13:19:12 19 Aug 2012 | 13:39:20 19 Aug 2012 | 20 minutes 8 seconds |
| Identifying candidate junctions | 13:39:20 19 Aug 2012 | 13:40:51 19 Aug 2012 | 1 minute 31 seconds |
| Candidate junction alignment | 13:40:51 19 Aug 2012 | 14:48:41 19 Aug 2012 | 1 hour 7 minutes 50 seconds |
| Resolving alignments with candidate junctions | 14:48:41 19 Aug 2012 | 15:05:34 19 Aug 2012 | 16 minutes 53 seconds |
| Creating BAM files | 15:05:34 19 Aug 2012 | 15:22:06 19 Aug 2012 | 16 minutes 32 seconds |
| Tabulating error counts | 15:22:06 19 Aug 2012 | 15:29:14 19 Aug 2012 | 7 minutes 8 seconds |
| Re-calibrating base error rates | 15:29:14 19 Aug 2012 | 15:29:35 19 Aug 2012 | 21 seconds |
| Read alignment mutations | 15:29:35 19 Aug 2012 | 16:26:27 19 Aug 2012 | 56 minutes 52 seconds |
| Output | 16:26:27 19 Aug 2012 | 16:28:39 19 Aug 2012 | 2 minutes 12 seconds |
| Total | 8 hours 21 minutes 40 seconds | ||
