breseq  version 0.17d  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Read File Information

read filereadsbaseslongest
errors05_R11,086,502164,061,802151 bases
errors05_R21,086,502164,061,802151 bases
total2,173,004328,123,604151 bases

Reference Sequence Information

seq idlengthcoveragenbinom meannbinom sizedescription
coveragedistributionNC_0131983,010,11198.399.838.7Lactobacillus rhamnosus GG, complete genome.
total3,010,111

Junction Prediction Information

reference sequenceread start probability
NC_0131980.83512

Execution Times

stepstartendelapsed
Read and reference sequence file input11:35:11 22 May 201211:37:33 22 May 20122 minutes 22 seconds
Read alignment to reference genome11:37:34 22 May 201212:10:36 22 May 201233 minutes 2 seconds
Preprocessing alignments for candidate junction identification12:10:36 22 May 201212:13:06 22 May 20122 minutes 30 seconds
Preliminary analysis of coverage distribution12:13:06 22 May 201212:17:24 22 May 20124 minutes 18 seconds
Identifying candidate junctions12:17:24 22 May 201212:17:31 22 May 20127 seconds
Candidate junction alignment12:17:31 22 May 201212:37:53 22 May 201220 minutes 22 seconds
Resolving alignments with candidate junctions12:37:53 22 May 201212:40:57 22 May 20123 minutes 4 seconds
Creating BAM files12:40:57 22 May 201215:26:49 22 May 20122 hours 45 minutes 52 seconds
Tabulating error counts15:26:49 22 May 201215:28:35 22 May 20121 minute 46 seconds
Re-calibrating base error rates15:28:35 22 May 201215:28:39 22 May 20124 seconds
Read alignment mutations15:28:39 22 May 201215:44:53 22 May 201216 minutes 14 seconds
Output15:44:53 22 May 201215:45:44 22 May 201251 seconds
Total 4 hours 10 minutes 32 seconds