mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.17d
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| read file | reads | bases | longest | |
|---|---|---|---|---|
| errors | 02_R1 | 1,257,077 | 189,818,627 | 151 bases |
| errors | 02_R2 | 1,257,077 | 189,818,627 | 151 bases |
| total | 2,514,154 | 379,637,254 | 151 bases |
| seq id | length | coverage | nbinom mean | nbinom size | description | ||
|---|---|---|---|---|---|---|---|
| coverage | distribution | NC_013198 | 3,010,111 | 88.9 | 89.6 | 11.2 | Lactobacillus rhamnosus GG, complete genome. |
| total | 3,010,111 |
| reference sequence | read start probability |
|---|---|
| NC_013198 | 0.84622 |
| step | start | end | elapsed |
|---|---|---|---|
| Read and reference sequence file input | 23:46:57 21 May 2012 | 23:49:38 21 May 2012 | 2 minutes 41 seconds |
| Read alignment to reference genome | 23:49:38 21 May 2012 | 00:28:20 22 May 2012 | 38 minutes 42 seconds |
| Preprocessing alignments for candidate junction identification | 00:28:20 22 May 2012 | 00:30:50 22 May 2012 | 2 minutes 30 seconds |
| Preliminary analysis of coverage distribution | 00:30:50 22 May 2012 | 00:34:47 22 May 2012 | 3 minutes 57 seconds |
| Identifying candidate junctions | 00:34:47 22 May 2012 | 00:34:55 22 May 2012 | 8 seconds |
| Candidate junction alignment | 00:34:55 22 May 2012 | 00:56:58 22 May 2012 | 22 minutes 3 seconds |
| Resolving alignments with candidate junctions | 00:56:58 22 May 2012 | 01:00:12 22 May 2012 | 3 minutes 14 seconds |
| Creating BAM files | 01:00:12 22 May 2012 | 03:08:19 22 May 2012 | 2 hours 8 minutes 7 seconds |
| Tabulating error counts | 03:08:19 22 May 2012 | 03:09:57 22 May 2012 | 1 minute 38 seconds |
| Re-calibrating base error rates | 03:09:57 22 May 2012 | 03:10:01 22 May 2012 | 4 seconds |
| Read alignment mutations | 03:10:01 22 May 2012 | 03:24:52 22 May 2012 | 14 minutes 51 seconds |
| Output | 03:24:52 22 May 2012 | 03:25:39 22 May 2012 | 47 seconds |
| Total | 3 hours 38 minutes 42 seconds | ||
