New junction evidence
  seq id position reads (cov) reads (cov) score skew annotation gene product
* ? NC_013198 1058951 =78 (0.986)42 (0.531) 17/296 2.4 coding (53/183 nt) LGG_01046 hypothetical protein
?NC_013198 = 2898115 100 (1.248)coding (225/237 nt) LGG_02835 hypothetical protein
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GTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA......................................................................................................  .  NC_013198/1059082‑1058951
..................................................................................................................................GAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGC  .  NC_013198/2898115‑2898014
                                                                                                                                                                                                                                          
cgcgttaTGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTA                                                                                     >  2:562591/8‑151
    ttaTGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAA                                                                                 >  2:64249/4‑151
    ttaTGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCCGCGCCGGTGAACGCGTTATGGCAAGCGTGAACCAGCCCGGCTACAAA                                                                                 >  2:505190/4‑151
                         cttagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGG                                                            >  1:145570/10‑151
                         cttagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGGGGCCTTGG                                                            >  2:683312/10‑151
                           tagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCTGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGC                                                          <  1:514182/144‑1
                            agggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCG                                                         <  2:227737/145‑1
                                 aCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTGGGCCATTGCGCCCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATG                                                    <  2:704011/150‑1
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:871622/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  2:618549/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:459742/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:19275/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:182555/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:175296/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGGGGCCTTGGGCGTGAGGACC                                                 >  2:353475/6‑151
                                    gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCACAAGTGGCATTGGGCGTGATGACC                                                 >  2:859467/6‑151
                                      gtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATtcccgg                                               >  2:656605/4‑145
                                        gTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGC                                             <  1:570254/150‑1
                                              GGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGc                                       >  1:611154/1‑150
                                               GCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACTCCGGTCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTC                                      <  1:10280/151‑1
                                                    GGGCGTGATGGCCTGGGCTTGGCCATTGCGCCCAAGGTCCTTACCCTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGC                                 <  1:69899/151‑1
                                                        GTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGccc                             >  1:677533/1‑148
                                                              GCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTC                       >  1:775323/1‑151
                                                                  GGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTA                   >  1:321188/1‑151
                                                                  GGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTA                   >  1:593482/1‑151
                                                                   ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAT                  >  1:482844/4‑151
                                                                   ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAT                  >  1:71248/4‑151
                                                                   ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGCGATGACCGGGCTTTGGTCATTGCGCCCAAGGGCCTTAT                  >  2:537211/4‑151
                                                                    ggTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:512350/149‑1
                                                                    gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  2:460091/149‑1
                                                                    gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  2:197434/149‑1
                                                                    gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:157374/149‑1
                                                                    gcTTGGCCATTAAGAGAAAGGTCCTTACACTCAGATCTCTGCGCGGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:627571/149‑1
                                                                    acagGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:792946/147‑1
                                                                        GGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGctgt             >  2:792716/1‑147
                                                                            cTTGCGGGCAAGGTCTTTACACTCCGTTCGCGAAGACGGTGAACGGGTTAGGGTTAGCGTGAACCTGCCCGGTTAGAAACCGGAGCATAAGTGGCCATTGGCGTGATGACCGGGCTTTGGTCATTGCACCCAAAGTCCTTATGTGCAGGgt         <  2:552840/150‑3
                                                                            ATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTT         <  1:783068/151‑1
                                                                                 GACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGG    <  1:682694/151‑1
                                                                                 GACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGG    >  2:764545/1‑151
                                                                                  ACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGG   >  2:812165/1‑151
                                                                                  ACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGG   >  1:725219/1‑151
                                                                                   CCAAGGTCCTTACACTCCGTCCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGC  <  2:167957/151‑1
                                                                                                                                                                                                                                          
GTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA......................................................................................................  .  NC_013198/1059082‑1058951
..................................................................................................................................GAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGC  .  NC_013198/2898115‑2898014

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG