New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	NC_013198	1058951 =	78 (0.986)	42 (0.531)	17/296	2.4	coding (53/183 nt)	LGG_01046	hypothetical protein
	?	NC_013198	= 2898115	100 (1.248)				coding (225/237 nt)	LGG_02835	hypothetical protein
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GTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA......................................................................................................  .  NC_013198/1059082‑1058951 ..................................................................................................................................GAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGC  .  NC_013198/2898115‑2898014                                                                                                                                                                                                                                            cgcgttaTGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTA                                                                                     >  2:562591/8‑151     ttaTGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAA                                                                                 >  2:64249/4‑151     ttaTGAGCGTGAACCGGCGCGCTTAGGGATCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCCGCGCCGGTGAACGCGTTATGGCAAGCGTGAACCAGCCCGGCTACAAA                                                                                 >  2:505190/4‑151                          cttagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGG                                                            >  1:145570/10‑151                          cttagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGGGGCCTTGG                                                            >  2:683312/10‑151                            tagggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCTGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGC                                                          <  1:514182/144‑1                             agggatCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCG                                                         <  2:227737/145‑1                                  aCGGAGTGTAAGTGGCCTTGGGCGTGATGGCCTGGGCTGGGCCATTGCGCCCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATG                                                    <  2:704011/150‑1                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:871622/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  2:618549/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:459742/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:19275/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:182555/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACC                                                 >  1:175296/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGGGGCCTTGGGCGTGAGGACC                                                 >  2:353475/6‑151                                     gagtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCACAAGTGGCATTGGGCGTGATGACC                                                 >  2:859467/6‑151                                       gtgTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATtcccgg                                               >  2:656605/4‑145                                         gTAAGTGGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGC                                             <  1:570254/150‑1                                               GGCCTTGGGCGTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGc                                       >  1:611154/1‑150                                                GCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACTCCGGTCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTC                                      <  1:10280/151‑1                                                     GGGCGTGATGGCCTGGGCTTGGCCATTGCGCCCAAGGTCCTTACCCTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGC                                 <  1:69899/151‑1                                                         GTGATGGCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGccc                             >  1:677533/1‑148                                                               GCCTGGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTC                       >  1:775323/1‑151                                                                   GGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTA                   >  1:321188/1‑151                                                                   GGGCTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTA                   >  1:593482/1‑151                                                                    ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAT                  >  1:482844/4‑151                                                                    ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTAT                  >  1:71248/4‑151                                                                    ggcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGCGATGACCGGGCTTTGGTCATTGCGCCCAAGGGCCTTAT                  >  2:537211/4‑151                                                                     ggTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:512350/149‑1                                                                     gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  2:460091/149‑1                                                                     gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  2:197434/149‑1                                                                     gcTTGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:157374/149‑1                                                                     gcTTGGCCATTAAGAGAAAGGTCCTTACACTCAGATCTCTGCGCGGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:627571/149‑1                                                                     acagGGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATG                 <  1:792946/147‑1                                                                         GGCCATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGctgt             >  2:792716/1‑147                                                                             cTTGCGGGCAAGGTCTTTACACTCCGTTCGCGAAGACGGTGAACGGGTTAGGGTTAGCGTGAACCTGCCCGGTTAGAAACCGGAGCATAAGTGGCCATTGGCGTGATGACCGGGCTTTGGTCATTGCACCCAAAGTCCTTATGTGCAGGgt         <  2:552840/150‑3                                                                             ATTGCGACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTT         <  1:783068/151‑1                                                                                  GACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGG    <  1:682694/151‑1                                                                                  GACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGG    >  2:764545/1‑151                                                                                   ACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGG   >  2:812165/1‑151                                                                                   ACCAAGGTCCTTACACTCCGATCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGG   >  1:725219/1‑151                                                                                    CCAAGGTCCTTACACTCCGTCCCCTGCGCCGGTGAACGCGTTATGGTGAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGCCCAAGGTCCTTATGTGCAGGTTTCTGGGC  <  2:167957/151‑1                                                                                                                                                                                                                                            GTTATGGTGAGCGTGAGCCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGGCCTGGGTTTGGCCATTGCGACCAAGGTCCTTACACGCAGATCCCTGCGCCGGTGAACGCGTTATGGTGA......................................................................................................  .  NC_013198/1059082‑1058951 ..................................................................................................................................GAGCGTGAACCAGCCCGGTTAGAAACCGGAGCATAAGTGGCCTTGGGCGTGATGACCGGGCTTTGGTCATTGCGACCAAGGTCCTTATGTGCAGGTTTCTGGGC  .  NC_013198/2898115‑2898014 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG