breseq  version 0.17d  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Read File Information

read filereadsbaseslongest
errors06_R1874,318132,022,018151 bases
errors06_R2874,318132,022,018151 bases
total1,748,636264,044,036151 bases

Reference Sequence Information

seq idlengthcoveragenbinom meannbinom sizedescription
coveragedistributionNC_0131983,010,11180.180.321.7Lactobacillus rhamnosus GG, complete genome.
total3,010,111

Junction Prediction Information

reference sequenceread start probability
NC_0131980.85190

Execution Times

stepstartendelapsed
Read and reference sequence file input15:45:44 22 May 201215:47:32 22 May 20121 minute 48 seconds
Read alignment to reference genome15:47:32 22 May 201216:14:06 22 May 201226 minutes 34 seconds
Preprocessing alignments for candidate junction identification16:14:06 22 May 201216:16:09 22 May 20122 minutes 3 seconds
Preliminary analysis of coverage distribution16:16:09 22 May 201216:19:48 22 May 20123 minutes 39 seconds
Identifying candidate junctions16:19:48 22 May 201216:19:54 22 May 20126 seconds
Candidate junction alignment16:19:54 22 May 201216:33:22 22 May 201213 minutes 28 seconds
Resolving alignments with candidate junctions16:33:22 22 May 201216:35:49 22 May 20122 minutes 27 seconds
Creating BAM files16:35:49 22 May 201219:34:55 22 May 20122 hours 59 minutes 6 seconds
Tabulating error counts19:34:55 22 May 201219:36:25 22 May 20121 minute 30 seconds
Re-calibrating base error rates19:36:25 22 May 201219:36:29 22 May 20124 seconds
Read alignment mutations19:36:29 22 May 201219:50:05 22 May 201213 minutes 36 seconds
Output19:50:05 22 May 201219:50:39 22 May 201234 seconds
Total 4 hours 4 minutes 55 seconds