mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.17d
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 615,483 | T→C | S422P (CTG→CCG) | treB | PTS system beta‑glucoside‑specific transporter subunit IIABC |
| JC | 751,569 | 127 bp x 2 | duplication | napA/gph | Na/H antiporter/haloacid dehalogenase‑like family hydrolase |
| RA | 751,632 | T→G | intergenic (+65/‑194) | napA/gph | Na/H antiporter/haloacid dehalogenase‑like family hydrolase |
| RA | 751,663 | T→C | intergenic (+96/‑163) | napA/gph | Na/H antiporter/haloacid dehalogenase‑like family hydrolase |
| RA | 1,877,343 | 2 bp→AA | intergenic (‑372/‑78) | LGG_01847/LGG_01848 | membrane protein/hypothetical protein |
| RA | 1,877,348 | G→A | intergenic (‑377/‑74) | LGG_01847/LGG_01848 | membrane protein/hypothetical protein |
| RA | 1,877,374 | C→G | intergenic (‑403/‑48) | LGG_01847/LGG_01848 | membrane protein/hypothetical protein |
| RA | 1,883,242 | C→A | intergenic (‑292/+93) | ABC‑SBP/LGG_01854 | ABC transporter substrate‑binding protein/hypothetical protein |
| RA | 2,197,266 | T→G | T170P (ACC→CCC) | yqhD | iron‑containing alcohol dehydrogenase |
| RA | 2,353,548 | G→A | S767F (TCC→TTC) | LGG_02282 | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_013198 | 1873051–1873845 | 1873885 | 41–835 | 31 [22] | [22] 23 | [LGG_01843] | [LGG_01843] |
| * | * | ÷ | NC_013198 | 2574316 | 2574546 | 231 | 23 [22] | [21] 23 | [LGG_02511]–[LGG_02512] | [LGG_02511], [LGG_02512] |
| Unassigned new junction evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | annotation | gene | product | ||
| * | ? | NC_013198 | = 1038045 | 6 (0.077) | 67 (0.865) | 35/290 | 0.6 | coding (872/978 nt) | LGG_01023 | adenine specific DNA methylase Mod |
| ? | NC_013198 | 1038906 = | 9 (0.112) | intergenic (+13/‑238) | is36/LGG_01026 | transposase IS4 family protein/type III restriction‑modification system methylation subunit | ||||
| * | ? | NC_013198 | 1058951 = | 78 (0.986) | 42 (0.531) | 17/296 | 2.4 | coding (53/183 nt) | LGG_01046 | hypothetical protein |
| ? | NC_013198 | = 2898115 | 100 (1.248) | coding (225/237 nt) | LGG_02835 | hypothetical protein | ||||
| * | ? | NC_013198 | = 1877308 | 5 (0.066) | 66 (0.876) | 35/282 | 0.5 | intergenic (‑337/‑114) | LGG_01847/LGG_01848 | membrane protein/hypothetical protein |
| ? | NC_013198 | 1878895 = | 2 (0.025) | intergenic (+70/‑60) | LGG_01848/tRNA‑Leu | hypothetical protein/tRNA‑Leu | ||||